Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

BioPAX grounding improvements #390

Merged
merged 13 commits into from
Feb 6, 2018
Merged

Conversation

bgyori
Copy link
Member

@bgyori bgyori commented Feb 6, 2018

This PR covers a broader set of namespaces when extracting grounding for small molecules and RNAs from BioPAX. It also adds some new ChEBI resources along the way, like a mapping from secondary IDs to primary IDs, and adds a new resource to map CAS IDs to ChEBI IDs. This reduces the overall number of ungrounded small molecules by ~60% and ungrounded RNAs by ~95% in extractions.

Fixes #237
Does most of #255

@bgyori bgyori merged commit 12443b3 into sorgerlab:master Feb 6, 2018
@bgyori bgyori deleted the biopax_grounding branch February 6, 2018 22:15
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant