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46 Open 27 Closed
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Issues list

Template mode in AFcluster fails to retrieve pdb
#185 opened Nov 4, 2024 by leonart3
asymmetric inputs for get_con_loss inside _loss_binder
#184 opened Oct 9, 2024 by pagpires
mk_af_model.predict and localcolabfold
#183 opened Oct 8, 2024 by vuhongai
1
ColabDesign RFdiffusion FileNotFoundError
#181 opened Oct 4, 2024 by ttessie2
3
ColabDesign license
#180 opened Oct 3, 2024 by komatsuna-san
4
options for ligandmpnn in colabdesign
#179 opened Sep 4, 2024 by ShuhaoGithub
WARNING: 'model_1_ptm' not found WARNING: 'model_2_ptm' not found
#178 opened Jul 2, 2024 by wendi-luo
error in cyclic design notebook
#175 opened Jun 19, 2024 by overlord1647
MMSEQ2 NCBI labels (how can we keep them)
#174 opened Jun 6, 2024 by MishterBluesky
Is it preferable for the "con" metric to have a smaller value during the optimization process?
#171 opened Feb 20, 2024 by milkboylyf
converting other MPNN checkpoints for support in ColabDesign and JAX
#165 opened Dec 12, 2023 by adrienchaton
8
Locally Run ColabDesign
#162 opened Oct 22, 2023 by Leo-T-Zang
Is the "i_pae" score in the designability_test.py the same as pAE_interaction?
#161 opened Sep 29, 2023 by SantiagoMille
Can af_cyc_design generate cyclic pepitide with D-Amino acid
#160 opened Sep 28, 2023 by yrq3027
1
Contigs messed up with partial diffusion and manual symmetry
#158 opened Aug 25, 2023 by ali-j-scott
How to continue a design run?
#157 opened Jul 26, 2023 by amin-sagar
Partially folding a structure using AF
#156 opened Jul 19, 2023 by aravinda1879
fix_pos in af/fixbb
#155 opened Jul 11, 2023 by dandaman
2
Do the soft iterations in pssm_semigreedy obey the bias matrix
#153 opened Jul 4, 2023 by amin-sagar
Is it possible to bypass the design step of AfDesign?
#152 opened Jun 27, 2023 by johnnytam100
How to get PAE files when running RFdiffusion
#145 opened May 24, 2023 by remybonnav
Translate colab for RFdiffusion to a jupyter notebook?
#144 opened May 23, 2023 by remybonnav
Allow to select the Complex_beta_ckpt model in RFdiffusion colab?
#143 opened May 23, 2023 by remybonnav
Patch fix_partial_contigs when residue numbering in PDB has a gap
#142 opened May 15, 2023 by data2code
2
MPNN designed sequence not separated correctly with multiple targets and multiple binders
#141 opened May 13, 2023 by data2code
2
ProTip! What’s not been updated in a month: updated:<2024-10-18.