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Template mode in AFcluster fails to retrieve pdb #185

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leonart3 opened this issue Nov 4, 2024 · 0 comments
Open

Template mode in AFcluster fails to retrieve pdb #185

leonart3 opened this issue Nov 4, 2024 · 0 comments

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@leonart3
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leonart3 commented Nov 4, 2024

When template mode is set to custom and PDB_ID and chain_ID are defined, the code fails to retrieve the pdb. This presumably has something to do with the module that ColabDesign uses to fetch pdbs. Does colabdesign use something instead of get_pdb or does this need to be defined somewhere in the installation code?

eps max: 17.0
18 clusters
116 seqs not clustered
aligning template

NameError Traceback (most recent call last)
in <cell line: 153>()
162 propagate_to_copies=propagate_to_copies,
163 use_seq=not rm_sequence,
--> 164 get_pdb_fn=get_pdb,
165 align_fn=run_hhalign)
166 batches.append(batch)

NameError: name 'get_pdb' is not defined

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