Releases: silx-kit/silx
v2.2.0
What's Changed
-
silx view
-
silx.gui
silx.gui.colors
: Add "percentile" mode for autoscaling (PR #4154)silx.gui.data.DataViewer.DataViewer
: Fixed issue with accessing views after using the removeView method. (PR #4131)silx.gui.dialog.ColormapDialog
: Fixed typo in method name getDisplayMode (PR #4142)silx.gui.plot.tools.profile
: Fixed profile error when plot item is None (PR #4196)silx.gui.plot.items
: Fixed Marker.setSymbolSize (PR #4181)silx.gui.plot.ImageStack
: Fixed_urlIndexes
initialization. (PR #4189)silx.gui.plot.tools.profile.manager
: Fixed threaded execution to avoid seg fault with PySide6.7 (PR #4169)silx.gui.plot.PlotWidget.addCurve
: Fixed progression in color, linestyle (PR #4138)silx.gui.plot.PlotWidget
: Fixed support of PySide6 (PR #4136)silx.gui.widgets.FrameBrowser
: Added a play button toHorizontalSliderWithBrowser
(PR #4176)
-
silx.io
silx.io.fioh5
: Added tests for NaN and in file (PR #4179)silx.io.fioh5
: Improved handling of missing data entries (PR #4156)silx.io.h5py_utils
: Fixed support of libhdf5 v1.14.4 (PR #4177)silx.io.h5py_utils
: Addedis_h5py_exception
andretry_h5py_error
(PR #4200)silx.io.specfile
: FixedSpecFile
deallocation issue (PR #4129)silx.ui.specfile
: Fixed by using int instead of long in cython code (PR #4195)silx.io.url
: Added HSDS URL support (PR #4119)silx.io.utils
: Removedprint
statement (PR #4192)
-
silx.math.fit.peaks
: Fixed-Wuse-after-free
warning (PR #4147) -
silx.opencl
-
silx.utils
-
Documentation
-
Dependencies
-
Tests
- Improved tests by converting warnings to errors (PR #4113)
-
Continuous Integration
- Added build and deployment of Windows installer to the release workflow (PR #4122)
- Added tests and wheel generation for Python 3.13 (PR #4201)
- Removed appveyor (PR #4171)
- Enabled OpenCL tests on Linux and OpenGL tests on Windows (PR #4172)
- Fixed issues and updated CI configuration (PR #4126, #4149, #4164, #4126)
New Contributors
- @felix-engelmann made their first contribution in #4119
- @malte-storm made their first contribution in #4131
- @RebeloAlexis made their first contribution in #4132
- @EdgarGF93 made their first contribution in #4138
- @clemisch made their first contribution in #4154
Full Changelog: v2.1.2...v2.2.0
2.2.0b0: 2025/01/14
What's Changed
- Documentation: Added missing arg in docstring of open_item by @loichuder in #4117
- Tests: Improved tests by converting warnings to errors by @t20100 in #4113
- silx.io.url: Added HSDS URL support by @felix-engelmann in #4119
- silx.io.specfile: Fixed
SpecFile
deallocation issue by @t20100 in #4129 - Dependencies: Removed numpy from build dependency by @t20100 in #4114
- Documentation: Added how-to make a release by @t20100 in #4112
- silx.gui.data.DataViewer.DataViewer: Fixed issue with accessing views after using the removeView method. by @malte-storm in #4131
- Continuous Integration: Added build and deployment of Windows installer to the release workflow by @t20100 in #4122
- CI: Updated release workflow to be more verbose by @t20100 in #4126
- silx.view.Viewer : New feature to display multiple curves in a new window by @RebeloAlexis in #4132
- silx.app.view.CustomPlotSelectionWindow : Added tooltip for name and display file name only by @RebeloAlexis in #4137
- silx.gui.plot.PlotWidget.addCurve: Fixed progression in color, linestyle by @EdgarGF93 in #4138
- silx.app.view.CustomPlotSelectionWindow : Added the documentation by @RebeloAlexis in #4140
- silx.app.view.CustomPlotSelectionWindow : Add dataset directly from silx + drop overlay on plot by @RebeloAlexis in #4141
- silx.gui.dialog.ColormapDialog: Fixed typo in method name getDisplayMode by @vallsv in #4142
- silx.app.view.test.test_plotselection : Added test for CustomPlotSelectionWindow by @RebeloAlexis in #4145
- User documentation for the PlotSelection feature by @RebeloAlexis in #4146
- silx.utils.enum: Deprecated
Enum.from_value
method by @loichuder in #4143 - silx.utils.ExternalResources: Allow to set data_home when instantiating the class by @loichuder in #4151
silx.opencl.convolution
: Fixed separable convolution on CPU that crashed in some cases by @pierrepaleo in #4150- silx.util.retry: Fixed resetting the timeout timer when iterating by @woutdenolf in #4157
- Documentation: Improved release instructions by @woutdenolf in #4163
silx.math.fit.peaks
: Fixed-Wuse-after-free
warning by @t20100 in #4147- CI: Updated configuration; Dependencies: Removed
bitshuffle
from test dependencies by @t20100 in #4164 - silx.gui.plot.PlotWidget: Fixed support of PySide6 by @t20100 in #4136
- Documentation: Updated installation and contribution documentation by @t20100 in #4148
- Tests and continuous integration: Fixed issues and updated CI configuration by @t20100 in #4149
- silx.gui.colors: Add "percentile" mode for autoscaling by @clemisch in #4154
- silx.io.fioh5: Improved handling of missing data entries by @tifuchs in #4156
- HorizontalSliderWithBrowser: slider with play button by @EdgarGF93 in #4176
- silx.io.h5py_utils: Fixed support of libhdf5 v1.14.4 by @t20100 in #4177
- CI: Removed appveyor by @t20100 in #4171
- CI: Enabled OpenCL tests on Linux and OpenGL tests on Windows by @t20100 in #4172
- silx.gui.plot.ImageStack: fix
_urlIndexes
initialization. by @payno in #4189 - silx.opencl: Fixed deprecation warning upon texture creation by @pierrepaleo in #4193
- MNT: use only int instead of long in cython code by @tacaswell in #4195
- silx.gui: support imageaggregate in _plot2d by @EdgarGF93 in #4174
- silx.io.h5py_utils: Added is_h5py_exception and retry_h5py_error` by @woutdenolf in #4200
- CI: Added tests and wheel generation for Python 3.13 by @t20100 in #4201
New Contributors
- @felix-engelmann made their first contribution in #4119
- @malte-storm made their first contribution in #4131
- @RebeloAlexis made their first contribution in #4132
- @EdgarGF93 made their first contribution in #4138
- @clemisch made their first contribution in #4154
Full Changelog: v2.1.2...v2.2.0b0
2.1.2: 2024/10/23
What's Changed
-
Bug fixes
silx.gui
: Fixed memory leak: Updated OpenGL text rendering to use Qt when possible
Full Changelog: v2.1.1...v2.1.2
2.1.1: 2024/08/14
What's Changed
-
Bug fixes
silx.io.specfile
: FixedSpecFile
deallocation issue (PR #4129)silx.gui.data.DataViewer.DataViewer
: Fixed issue with accessing views after using the removeView method (PR #4131)silx.opencl.convolution
: Fixed separable convolution on CPU that crashed in some cases by (PR #4150)silx.util.retry
: Fixed resetting the timeout timer when iterating (PR #4157)
-
Dependencies
- Removed numpy from build dependency (PR #4114)
Full Changelog: v2.1.0...v2.1.1
2.1.0: 2024/04/19
This version of silx
supports Python 3.8 to 3.12.
This is the first version of silx
supporting numpy
v2.
What's Changed...
-
silx.image.marchingsquare
: Fixed cython code generation warning (PR #4110) -
silx.io
: -
silx.gui
:silx.gui.data.RecordTableView
: Fixed cell background color in dark mode (PR #4094)silx.gui.plot.PlotWidget
: Fixed support of negative error values for curves and scatter plot (PR #4079)silx.gui.widgets.LegendIconWidget
: Fixed logging: removingprint
(PR #4064)silx.gui.widgets.ElidedLabel
: Fixed deprecation warning with Qt5>=5.11 (PR #4091)
-
silx.math.marchingcubes
: Fixed compilation warnings (PR #4065) -
silx.opencl.common
: Changedocl
object for lazy initialization of OpenCL devices (PR #4093) -
silx.resources
: Changed dependency from deprecatedpkg_resources
toimportlib_resources
for Python<3.9 (PR #4078) -
Dependencies
-
Documentation:
-
Continuous integration:
-
Build: Fixed Debian12 packaging by removing build of documentation (PR #4068)
New Contributors
- @cchndl made their first contribution in #4094
- @ChannyClaus made their first contribution in #4107
Full Changelog: v2.0.1...v2.1.0
2.0.1: 2024/03/18
This is a bug fix version.
What's Changed
silx.io.open
: Reverted behavior:open
locks HDF5 files (PR #4074, #4084)- Dependencies: Updated to advertise that
numpy
v2 is not supported (PR #4084)
Full Changelog: v2.0.0...v2.0.1
2.0.0: 2024/01/30
This version of silx
supports Python 3.7 to 3.12.
This is the last version of silx
supporting Python 3.7.
The silx.gui
package supports PySide6
, PyQt6
and PyQt5
(PySide2
is no longer supported).
Breaking API change: silx.gui.plot.PlotWidget
's add methods (i.e., addCurve
, addImage
, ...) returns the plot item object instance instead of its legend (#3996).
What's Changed...
silx applications
-
Added
silx compare
, a dedicated application to compare images (PR #3788, #3827, #3884, #3943, #3944) -
silx view
:- Added
--slices
option (PR #3860) - Added supports for data URL containing "**" to match multiple sub groups (PR #3795)
- Added keyboard shortcuts for open/close all (PR #3863)
- Improved: Stopped displaying a message box for each error (PR #3955)
- Improved: Use matplotlib if OpenGL is not available (PR #3905)
- Fixed support of NXData image with 0-length axis (PR #3768)
- Fixed setting focus at startup when opening a dataset (PR #3953)
- Added
-
silx.app.utils
: Refactored (PR #3811)
silx.io
-
silx.io.dictdump
: -
silx.io.h5py_utils
: -
silx.io.nxdata.parser
: FixedNXdata
validation (PR #3782) -
silx.io.url
: -
silx.io.utils
:
silx.math
- Fixed several function docstrings (PR #3774)
silx.math.colormap
: Addednormalize
function to normalize touint8
(PR #3785)silx.math.fit
: Added split pseudo-voigt with split lorentzian fraction (PR #3902)
silx.opencl
-
Fixed regression with PoCL and order of floating point operations (PR #3935)
-
Fixed: skip test on broken platform (PR #3809)
-
Fixed: prevent crash at init when loading silx with PortableCL + Cuda devices (PR #3924)
-
silx.opencl.atomic
: Added new checking for atomic32 and atomic64 operation (PR #3855) -
silx.opencl.backprojection
: Removed deprecatedfourier_filter
function (PR #3816) -
silx.opencl.codec
: -
`silx.opencl.common``:
-
silx.opencl.convolution
: Removed Python 2 compatible code (PR #3818)
silx.third_party
- Removed copy of scipy's Delaunay from third_party (PR #3808)
- Deprecated
EdfFile
andTiffIO
(PR #3841)
silx.gui
-
silx.gui
:- Added support for
QT_API
environment variable (PR #3981) - Added a warning about pyOpenGL and Qt compatibility (PR #3738)
- Added some Python typing (PR #3957)
- Removed support of PySide6<6.4 (PR #3872)
- Improved
qWidgetFactory
test fixture (PR #4009) - Fixed support of PySide 6.4 enums (PR #3737)
- Fixed support of PyQt6 (PR #3960, #3966, #3989, #3999, #4003)
- Fixed support of OpenGL with python3.12 and pyopengl <=3.1.7 (PR #3982)
- Fixed OpenGL version parsing (PR #3733)
- Added support for
-
silx.gui.colors
: -
silx.gui.constants
: Added: expose URI used to drag and dropDataUrl
(PR #3796) -
silx.gui.data
:- Fixed issue with hdf5 attributes string formatting (PR #3790)
silx.gui.data.DataView
: Removed patch for pymca <v5.3.0 support (PR #3800)silx.gui.data.HDF5TableView
: Fixed virtual and external dataset information (PR #3717)silx.gui.data.RecordTableView
: Fixed issue with datasets with many rows failing to load due to incorrect variable type (PR #3926)
-
silx.gui.dialog
: -
silx.gui.hdf5
: -
silx.gui.qt
: -
silx.gui.plot
:-
silx.gui.plot.actions
: Added typings forPlotAction
(PR #3941) -
silx.gui.plot.items
:-
Added
Marker
item font configuration (PR #3956) -
Added background color for markers and removed automatic background color (PR #4012)
-
Added
get|setLineGapColor
methods toCurve
andHistogram
(PR #3973) -
Renamed
Shape.get|setLineBgColor
toget|setLineGapColor
(PR #4001) -
Deprecated
Curve
andImage
sequence-like access (PR #3803) -
Improved handling of data ndim and shape for image items (PR #3976)
-
Fixed: Removed
ImageDataAggregated
all-NaN warning (PR #3786) -
Fixed
Shape
display with dashes and a background color (PR #3906) -
silx.gui.plot.items.roi
:- Added
RegionOfInterest
'sgetText
andsetText
methods (PR #3847) - Added
populateContextMenu
method to ROIs (PR #3891) - Added
ArcROI.getPositionRole
method (PR #3894) - Added ROIs base classes to documentation (PR #3839)
- Removed deprecated methods
RegionOfInterest.get|setLabel
(PR #3810) - Improved `ArcROI``: Hide the handler instead of hidding the symbol (PR #3887)
- Improved: highlighted RegionOfInterest takes priority for interactions (PR #3975)
- Fixed ROI initialisation with parent (PR #4053)
- Added
-
-
silx.gui.plot.ColorBar
: Fixed division by zero issue (PR #4013) -
silx.gui.plot.CompareImages
: -
silx.gui.plot.ImageStack
: -
silx.gui.plot.ImageView
: Fixed histogram visibility (PR #3742) -
silx.gui.plot.PlotWidget
:-
Breaking changes:
-
Added
margins
argument toPlotWidget.setLimits
(PR #3828) -
Added
Plotwidget.get|setDefaultColors
and updated default colors behavior (PR #3835) -
Added
PlotWidget.sigBackendChanged
(PR #3890) -
Added support for 'other' kind of plot items (PR #3908)
-
Added support of matplotlib tight layout as an experimental feature (PR #3865)
-
Added support of line style defined as
(offset, (dash pattern))
(PR #4020) -
Added support for indexed color names support (PR #3836)
-
Added sample script to check and compare backend features (PR #4031)
-
Changed curve default colors to matchthe one from matplotlib >=2.0 (PR #3853)
-
Changed curve highlighting to use by default a linewidth of 2 (PR #3854)
-
Changed plot axes tick labels behavior to use offsets (PR #4007)
-
Changed: use the default font from mpl (PR #4025)
-
Changed font management (PR #4047)
-
Improved rendering for OpenGL backend (PR #4002, #4015, #4023, #4034, #4038)
-
Fixed documentation (PR #3773)
-
Fixed mouse cursor update (PR #3904)
-
Fixed: do not reset zoom when changing axes scales (PR #3862, #3869)
-
Fixed: use
PlotWidget.get|setActiveScatter
instead of private method (PR #3987) -
Fixed tick display of time series (PR #4000)
-
Fixed matplotlib marker without background (PR #4028)
-
-
silx.gui.plot.PlotWindow
: Fixed display of zoom in/out actions (PR #3837) -
silx.gui.plot.RulerToolButton
: Added interactive plot measurement tool (PR #3959, #4005) -
silx.gui.plot.StackView
: RemovedsetColormap
autoscale
argument (PR #3805) -
silx.gui.plot.tools
:
-
-
silx.gui.plot3d
: -
silx.gui.utils.image
: Added support ofQImage.Format_Grayscale8
toconvertQImageToArray
(PR #3958) -
silx.gui.widgets
:
v2.0.0rc0
Release notes
This version of silx
supports Python 3.7 to 3.12.
The silx.gui
package supports PySide6
, PyQt6
and PyQt5
(PySide2
is no longer supported).
silx.gui.plot.PlotWidget
's add methods (i.e., addCurve
, addImage
, ...) returns the plot item object instance instead of its legend (#3996).
What's Changed
- Dropped python 3.6 support, Removed CI for
PySide2
by @t20100 in #3712 - Port v1.1.0 PRs from 1.1 branch and bumps version to
1.2.0dev
by @t20100 in #3711 - 3713 bitshuffle decompression by @kif in #3714
- Fix HDF5TableView virtual and external dataset information by @woutdenolf in #3717
- skip if h5py is too old by @kif in #3722
- Skipif on test rather than on fonction ... by @kif in #3723
- CI: Use
intel-opencl-icd
package by @t20100 in #3727 - Fixed support of
pint
>= 0.20 by @t20100 in #3725 - silx.gui.plot: Fixed reset of interaction when closing mask tool by @t20100 in #3735
- Dedicated function to parse gl version by @vallsv in #3733
- silx.gui.plot: Fixed issue when PlotWidget has a size of 0 by @t20100 in #3736
- Update rules by @kif in #3732
- silx.gui: Fixed support of PySide6.4 enums by @t20100 in #3737
- Fixed
numpy
,scipy
,matplotlib
deprecation warnings by @t20100 in #3741 - Fix histogram visibility by @vallsv in #3742
- Added
pytest-mock
to Debian build dependencies by @t20100 in #3740 - h5todict errors argument bug by @woutdenolf in #3749
- 3747 h5todict string issue by @woutdenolf in #3748
- Update tutorials.rst by @kif in #3765
- Fixed support of cython 3.0.0b1 by @t20100 in #3770
- [silx view] Fixed support of NXData image with 0-length axis by @t20100 in #3768
- Fixed
build-deb.sh
: Avoid to run Python fromsrc/silx
by @t20100 in #3772 - Update PlotWidget.py by @payno in #3773
- silx.math: Fix several function docstrings by @loichuder in #3774
- Correct numpy 1.25 deprecation warnings by @vasole in #3777
- close 3778 by @kif in #3779
- Fixed
silx.io.h5py_utils.retry
by @t20100 in #3775 silx.opencl.codec
: Added support of pyopencl'sBuffer
andArray
toBitshuffleLz4.decompress
by @t20100 in #3787- silx.gui.data: Fixed issue with hdf5 attributes string formatting by @t20100 in #3790
- silx.gui.widget.UrlSelectionTable: Fixed exception with interaction, renamed
get|setSelection
toget|setUrlSelection
by @t20100 in #3791 - launcher: Better error message by @vallsv in #3793
- silx.gui.dialog.ColormapDialog: Fixed ColormapDialog layout by @t20100 in #3792
- ioutils: Supports recursive match "**" by @vallsv in #3795
- color: Exception if vrange is not finite by @vallsv in #3794
- gui: Expose silx dnd uri by @vallsv in #3796
- silx.io.dictdump: Removed
dicttoh5
overwrite_data
argument by @t20100 in #3806 - This test fails on edna site with a CPU device by @kif in #3809
- Remove deprecated modules by @t20100 in #3804
- Removed features deprecated since <=0.7.0 by @t20100 in #3798
- Improve url selection by @vallsv in #3797
- Removed features deprecated from v0.8 to v0.12 by @t20100 in #3799
- silx.gui.plot.StackView: Removed
setColormap
autoscale
argument by @t20100 in #3805 - silx.opencl.common: Remove
OpenCL.create_context
useFp64
argument by @t20100 in #3801 - Refactor app utils by @vallsv in #3811
- Removed features deprecated from v0.13 to v0.15 by @t20100 in #3802
silx.gui.plot.items
: RemoveImageDataAggregated
all-NaN warning by @t20100 in #3786silx.math.colormap
: Addednormalize
function to normalize touint8
. by @t20100 in #3785- Remove unused imports by @t20100 in #3814
- Drop support of PySide2 by @t20100 in #3784
- silx.gui: Added a warning about pyOpenGL and Qt compatibility by @t20100 in #3738
silx.gui.qt
: Updated PySide6loadUi
function by @t20100 in #3783- silx.gui.plot: Removed deprecated methods RegionOfInterest.get|setLabel by @t20100 in #3810
- Remove python2 support by @t20100 in #3815
silx.opencl.backprojection
: Remove deprecatedfourier_filter
function by @t20100 in #3816- silx.gui.data.DataView: Removed patch for pymca <v5.3.0 support by @t20100 in #3800
- Debian12 by @kif in #3812
- Fix url with slices by @vallsv in #3821
- Urlselectiontable with 3 columns by @vallsv in #3822
silx.io.nxdata.parser
: FixedNXdata
validation by @t20100 in #3782- silx.gui.plot: Deprecate PlotWidget's Curve and Image sequence-like access by @t20100 in #3803
- [silx compare] Create a dedicated app to compare images by @vallsv in #3788
- Polish image compare app by @vallsv in #3827
- silx.opencl.convolution: Removed Python 2 compatible code by @t20100 in #3818
- Replace
OrderedDict
bydict
by @t20100 in #3830 - Add NXnote to the list of describable classes by @alejandrohomsp in #3832
silx.gui.plot
: Addedmargins
argument toPlotWidget.setLimits
by @t20100 in #3828silx.gui.plot
: FixedImageStack
handling of visible state by @t20100 in #3834silx.gui.plot
: Fixed display ofPlotWindow
zoom in/out actions by @t20100 in #3837silx.gui.plot
: AddedPlotwidget.get|setDefaultColors
and updated default colors behavior by @t20100 in #3835- Removed copy of scipy's Delaunay from third_party by @t20100 in #3808
- Remove code for support of fabio<0.9 by @t20100 in #3829
- Update
setup.py
build configuration: Removedsetup.py
commands and options by @t20100 in #3831 - Documentation: Added
silx.gui.plot.items.roi
base classes to documentation by @t20100 in #3839 - silx.gui.colors, silx.gui.plot: Added indexed color names in
rgba
andPlotWidget
by @t20100 in #3836 silx.gui.dialog
: FixedColormapDialog
state when updatingItem
by @t20100 in #3833- Fixed typo: 4
"
quotes instead of 3. by @t20100 in #3838 - Remove C header for Python 2 on Windows compatibilty by @t20100 in #3840
silx.third_party
: DeprecatedEdfFile
andTiffIO
by @t20100 in #3841- Fix rgb profile by @vallsv in #3846
- silx.gui.plot.items.roi: Added
RegionOfInterest
'sgetText
andsetText
methods by @t20100 in #3847 - Added profile to compare image by @vallsv in #3845
silx.gui.plot
: Added per-axis toggle ofPlotWidget
zoom by @t20100 in #3842- CompareImage: Feature a consistent autoscale by @vallsv in #3823
- silx.gui.plot: Added per axes zoom to
PlotWidget
by @t20100 in #3843 - Update the curve color cycle by @vallsv in #3853
- Use linewidth2 as default selected style by @vallsv in #3854
- CompareImages: Fix the A-B visualization mode by @vallsv in #3856
- Get data without schema by @vallsv in #3859
- Use "C" prefix to identify a color from the default palette by...