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Updated changelog and bump to v2.0.0
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t20100 authored Jan 30, 2024
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315 changes: 315 additions & 0 deletions CHANGELOG.rst
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Release Notes
=============

2.0.0: 2024/01/30
-----------------

This version of `silx` supports Python 3.7 to 3.12.
This is the last version of `silx` supporting Python 3.7.
The `silx.gui` package supports `PySide6`, `PyQt6` and `PyQt5` (`PySide2` is no longer supported).

**Breaking API change**: `silx.gui.plot.PlotWidget`'s add methods (i.e., `addCurve`, `addImage`, ...) returns the plot item object instance instead of its legend (https://github.com/silx-kit/silx/pull/3996).

silx applications
.................

* Added `silx compare`, a dedicated application to compare images (PR #3788, #3827, #3884, #3943, #3944)
* `silx view`:

* Added `--slices` option (PR #3860)
* Added supports for data URL containing "**" to match multiple sub groups (PR #3795)
* Added keyboard shortcuts for open/close all (PR #3863)
* Improved: Stopped displaying a message box for each error (PR #3955)
* Improved: Use matplotlib if OpenGL is not available (PR #3905)
* Fixed support of NXData image with 0-length axis (PR #3768)
* Fixed setting focus at startup when opening a dataset (PR #3953)

* `silx.app.utils`: Refactored (PR #3811)

silx.io
.......

* `silx.io.dictdump`:

* Removed `dicttoh5`'s `overwrite_data` argument (PR #3806)
* Improved error message for `dicttoh5` with non-serializable data (PR #3937)
* Fixed `h5todict` errors argument issue (PR #3749) and fixed-length string issue (PR #3748)

* `silx.io.h5py_utils`:

* Fixed `retry` (PR #3775)
* Fixed: Do not call multiprocessing module in frozen binaries (PR #3984)

* `silx.io.nxdata.parser`: Fixed `NXdata` validation (PR #3782)

* `silx.io.url`:

* Added support of URLs with slices to `DataUrl` (PR #3821)
* Added typings for `DataUrl` (PR #3968)
* Fixed `DataUrl`: Allow `file_path` to be `None` (PR #4051)

* `silx.io.utils`:

* Added support of bare file to `get_data` with `check_schemas=True` argument (PR #3859)
* Improved: `open` do not lock the file (PR #3939)
* Fixed small/big endian support in test (PR #3873)
* Fixed `h5py_read_dataset` support of empty arrays (PR #4052)

silx.math
.........

* Fixed several function docstrings (PR #3774)
* `silx.math.colormap`: Added `normalize` function to normalize to `uint8` (PR #3785)
* `silx.math.fit`: Added split pseudo-voigt with split lorentzian fraction (PR #3902)

silx.opencl
...........

* Fixed regression with PoCL and order of floating point operations (PR #3935)
* Fixed: skip test on broken platform (PR #3809)
* Fixed: prevent crash at init when loading silx with PortableCL + Cuda devices (PR #3924)
* `silx.opencl.atomic`: Added new checking for atomic32 and atomic64 operation (PR #3855)
* `silx.opencl.backprojection`: Removed deprecated `fourier_filter` function (PR #3816)
* `silx.opencl.codec`:

* Added `bitshuffle_lz4`` decompression (PR #3714)
* Added support of pyopencl's `Buffer` and `Array` to `BitshuffleLz4.decompress` (PR #3787)

* `silx.opencl.common``:

* Removed `OpenCL.create_context` `useFp64` argument (PR #3801)
* Reworked initialisation of the module (PR #3903)
* Updated: Defer to pyopencl the interpretation of `PYOPENCL_CTX` (PR #3933)

* `silx.opencl.convolution`: Removed Python 2 compatible code (PR #3818)

silx.third_party
................

* Removed copy of scipy's Delaunay from third_party (PR #3808)
* Deprecated `EdfFile` and `TiffIO` (PR #3841)

silx.gui
........

* `silx.gui`:

* Added support for `QT_API` environment variable (PR #3981)
* Added a warning about pyOpenGL and Qt compatibility (PR #3738)
* Added some Python typing (PR #3957)
* Removed support of PySide6<6.4 (PR #3872)
* Improved `qWidgetFactory` test fixture (PR #4009)
* Fixed support of PySide 6.4 enums (PR #3737)
* Fixed support of PyQt6 (PR #3960, #3966, #3989, #3999, #4003)
* Fixed support of OpenGL with python3.12 and pyopengl <=3.1.7 (PR #3982)
* Fixed OpenGL version parsing (PR #3733)

* `silx.gui.colors`:

* Added indexed color names support to `rgba` (PR #3836, #3861)
* Added typing (PR #3974)
* `silx.gui.colors.rgba`: Changed from `AssertionError` to `ValueError` (PR #3864)
* Improved: `Colormap.setVRange` raises an exception if the range is not finite (PR #3794)

* `silx.gui.constants`: Added: expose URI used to drag and drop `DataUrl` (PR #3796)

* `silx.gui.data`:

* Fixed issue with hdf5 attributes string formatting (PR #3790)
* `silx.gui.data.DataView`: Removed patch for pymca <v5.3.0 support (PR #3800)
* `silx.gui.data.HDF5TableView`: Fixed virtual and external dataset information (PR #3717)
* `silx.gui.data.RecordTableView`: Fixed issue with datasets with many rows failing to load due to incorrect variable type (PR #3926)

* `silx.gui.dialog`:

* `silx.gui.dialog.ColormapDialog`:

* Added `DisplayMode` to API by renaming `_DataInPlotMode` (PR #3964)
* Fixed layout (PR #3792)
* Fixed state when updating `Item` (PR #3833)
* Fixed robustness of tools with item inheriting from `ImageBase` (PR #3858)

* `silx.gui.hdf5`:

* Added `NXnote` to the list of describable classes (PR #3832)
* Added tests for `H5Node` soft link to an external link issue (PR #3220)

* `silx.gui.qt`:

* Updated PySide6 `loadUi` function (PR #3783)
* Fixed Python>3.9 support (PR #3779)

* `silx.gui.plot`:

* `silx.gui.plot.actions`: Added typings for `PlotAction` (PR #3941)
* `silx.gui.plot.items`:

* Added `Marker` item font configuration (PR #3956)
* Added background color for markers and removed automatic background color (PR #4012)
* Added `get|setLineGapColor` methods to `Curve` and `Histogram` (PR #3973)
* Renamed `Shape.get|setLineBgColor` to `get|setLineGapColor` (PR #4001)
* Deprecated `Curve` and `Image` sequence-like access (PR #3803)
* Improved handling of data ndim and shape for image items (PR #3976)
* Fixed: Removed `ImageDataAggregated` all-NaN warning (PR #3786)
* Fixed `Shape` display with dashes and a background color (PR #3906)
* `silx.gui.plot.items.roi`:

* Added `RegionOfInterest`'s `getText` and `setText` methods (PR #3847)
* Added `populateContextMenu` method to ROIs (PR #3891)
* Added `ArcROI.getPositionRole` method (PR #3894)
* Added ROIs base classes to documentation (PR #3839)
* Removed deprecated methods `RegionOfInterest.get|setLabel` (PR #3810)
* Improved `ArcROI``: Hide the handler instead of hidding the symbol (PR #3887)
* Improved: highlighted RegionOfInterest takes priority for interactions (PR #3975)
* Fixed ROI initialisation with parent (PR #4053)

* `silx.gui.plot.ColorBar`: Fixed division by zero issue (PR #4013)
* `silx.gui.plot.CompareImages`:

* Added profile to compare image (PR #3845)
* Improved consistency of autoscale (PR #3823)
* Fixed the A-B visualization mode (PR #3856)

* `silx.gui.plot.ImageStack`:

* Added URL removal feature if the list is editable (PR #3913)
* Fixed `ImageStack` handling of visible state (PR #3834)
* Fixed issue (PR #4050)

* `silx.gui.plot.ImageView`: Fixed histogram visibility (PR #3742)
* `silx.gui.plot.PlotWidget`:

* Breaking changes:

* Changed `add*` methods return value to return the item instead of its legend (PR #3996)
* Refactored management of items (PR #3986, #3988)

* Added `margins` argument to `PlotWidget.setLimits` (PR #3828)
* Added `Plotwidget.get|setDefaultColors` and updated default colors behavior (PR #3835)
* Added `PlotWidget.sigBackendChanged` (PR #3890)
* Added per-axis zoom (PR #3842, #3843)
* Added support for 'other' kind of plot items (PR #3908)
* Added support of matplotlib tight layout as an experimental feature (PR #3865)
* Added support of line style defined as `(offset, (dash pattern))` (PR #4020)
* Added support for indexed color names support (PR #3836)
* Added sample script to check and compare backend features (PR #4031)
* Changed curve default colors to matchthe one from matplotlib >=2.0 (PR #3853)
* Changed curve highlighting to use by default a linewidth of 2 (PR #3854)
* Changed plot axes tick labels behavior to use offsets (PR #4007)
* Changed: use the default font from mpl (PR #4025)
* Changed font management (PR #4047)
* Improved rendering for OpenGL backend (PR #4002, #4015, #4023, #4034, #4038)
* Fixed documentation (PR #3773)
* Fixed mouse cursor update (PR #3904)
* Fixed: do not reset zoom when changing axes scales (PR #3862, #3869)
* Fixed: use `PlotWidget.get|setActiveScatter` instead of private method (PR #3987)
* Fixed tick display of time series (PR #4000)
* Fixed matplotlib marker without background (PR #4028)

* `silx.gui.plot.PlotWindow`: Fixed display of zoom in/out actions (PR #3837)
* `silx.gui.plot.RulerToolButton`: Added interactive plot measurement tool (PR #3959, #4005)
* `silx.gui.plot.StackView`: Removed `setColormap` `autoscale` argument (PR #3805)

* `silx.gui.plot.tools`:

* `silx.gui.plot.tools.PositionInfo`: Fixed support of dark theme (PR #3965)
* `silx.gui.plot.tools.profile`: Fixed concurrency issue with RGB profiles (PR #3846)
* `silx.gui.plot.tools.roi.RegionOfInterestManager`:

* Changed interaction mode for ROI creation (PR #3978)
* Fixed display glitch (PR #3954)

* `silx.gui.plot3d`:

* Updated font management (PR #4047)
* Fixed deprecation warning (PR #4046)
* `silx.gui.plot3d.ParamTreeView`:

* Added typing and code cleanup (PR #3972)
* Fixed Qt6 support (PR #3971)

* `silx.gui.utils.image`: Added support of `QImage.Format_Grayscale8` to `convertQImageToArray` (PR #3958)

* `silx.gui.widgets`:

* `silx.gui.widgets.FloatEdit`:

* Added `widgetResizable` feature (PR #4006)
* Added typing and code cleanup (PR #3972)

* `silx.gui.widgets.StackedProgressBar`: Added widget displaying more complex information progress information (PR #4008)
* `silx.gui.plot.widgets.UrlList`: Added `UrlList` widget (PR #3913)
* `silx.gui.widget.UrlSelectionTable`:

* Improved look&feel and enabled drag&drop from `silx view` (PR #3797)
* Updated: Split the URL column in 3 columns (PR #3822)
* Fixed exception with interaction, renamed `get|setSelection` to `get|setUrlSelection` (PR #3791)

* `silx.gui.widgets.WaiterOverlay`: Added a widget to display processing wheel on top of another widget (PR #3876)

* `silx.utils`:

* `silx.utils.launcher`: Improved error message (PR #3793)
* `silx.utils.retry`: Fixed: Lazy-loading of multiprocessing module (PR #3979)

Miscellaneous
.............

* Dependencies:

* Removed support of Python 3.6 (PR #3712), `PySide2` (PR #3784) and `fabio`<0.9 (PR #3829)
* Replaced `setuptools`'s `pkg_resources` with `packaging` as runtime dependency (PR #3910)
* Fixed support of `pint` >= 0.20 (PR #3725), `cython` (PR #3770, #4033) and `PyInstaller` v6 (PR #4041)
* Fixed deprecation warnings from `numpy`, `scipy`, `matplotlib` and `h5py` (PR #3741, #3777, #4045, #3980)

* Clean-up:

* Removed features deprecated since <1.0.0 (PR #3798, #3799, #3802, #3804)
* Removed remaining Python2 support (PR #3815, #3840, #3952)
* Removed unused imports (PR #3814)
* Replaced `OrderedDict` by `dict` (PR #3830)
* Updated: Using `black` to format the code (PR #3991)
* Fixed typo: 4 `"` quotes instead of 3. (PR #3838)

* Build:

* Removed `setup.py` commands and options (PR #3831)
* Removed constraint on `setuptools` version (PR #3909)
* Updated build dependencies (PR #4035)
* Fixed Windows fat binary filename and links (PR #4048)
* Bump to 2.0.dev (PR #4014)

* Debian packaging:

* Removed Debian 10 and 11 packaging (PR #4017)
* Added Debian 12 packaging (PR #3812)
* Added `pytest-mock` to Debian build dependencies (PR #3740)
* Updated `build-deb.sh` (PR #4022, #3772) and `rules` (PR #3732)

* Updated documentation (PR #3765, #3899, #3970, #3994, #4037, #4036, #4039, #4042, #4055)
* Updated continuous integration (PR #3727, #3967, #3983)
* Fixed tests (PR #3722, #3723, #4043, #4044)

1.1.2: 2022/12/16
-----------------

This is a bug fix version:

* `silx.gui`:

* Fixed support of `PySide` 6.4 enums (PR #3737, #3738)
* Fixed OpenGL version parsing (PR #3733, #3738)

* `silx.gui.plot`:

* Fixed issue when `PlotWidget` has a size of 0 (PR #3736, #3738)
* Fixed reset of interaction when closing mask tool (PR #3735, #3738)

* Miscellaneous: Updated Debian packaging (PR #3732, #3738)

1.1.1: 2022/11/30
-----------------

This is a bug fix version:

* Fixed support of `pint` >= 0.20 (PR #3725, #3728)
* Fixed continuous integration (PR #3727, #3728)
* Updated changelog (PR #3729)

1.1.0: 2022/10/27
-----------------

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2 changes: 1 addition & 1 deletion src/silx/_version.py
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MAJOR = 2
MINOR = 0
MICRO = 0
RELEV = "candidate" # <16
RELEV = "final" # <16
SERIAL = 0 # <16

date = __date__
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