GitHub - salzberg-lab/Smaug: (Sensitive Model-guided Annotation for Unsupervised Gene finding) Can transformers https://en.wikipedia.org/wiki/Transformer_(machine_learning_model) improve upon state-of-the-art bacterial gene finding tools?

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(Sensitive Model-guided Annotation for Unsupervised Gene finding) Can transformers https://en.wikipedia.org/wiki/Transformer_(machine_learning_model) improve upon state-of-the-art bacterial gene finding tools?

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Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
README.md		README.md
custom_mask.ipynb		custom_mask.ipynb
custom_mask_colab.ipynb		custom_mask_colab.ipynb
custom_mask_colab_GPT2.ipynb		custom_mask_colab_GPT2.ipynb
extract_data.ipynb		extract_data.ipynb
extract_data_training_ecoli.ipynb		extract_data_training_ecoli.ipynb
extract_data_training_ecoli_wholegene.ipynb		extract_data_training_ecoli_wholegene.ipynb
hello_transformers.ipynb		hello_transformers.ipynb
shingler_threeprime.ipynb		shingler_threeprime.ipynb
smaug.ipynb		smaug.ipynb
smaug_eval.ipynb		smaug_eval.ipynb
smaug_eval_guillotine.ipynb		smaug_eval_guillotine.ipynb
smaug_eval_wholegene.ipynb		smaug_eval_wholegene.ipynb
smaug_train.ipynb		smaug_train.ipynb
smaug_train_guillotine.ipynb		smaug_train_guillotine.ipynb
smaug_train_wholegene.ipynb		smaug_train_wholegene.ipynb