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  1. Balrog Balrog Public

    Bacterial Annotation by Learned Representation of Genes

    Jupyter Notebook 55 5

  2. PSAURON PSAURON Public

    PSAURON is a machine learning model for rapid assessment of protein coding gene annotation

    Python 31

  3. bolotie bolotie Public

    SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity

    C++ 13 4

  4. BalrogCPP BalrogCPP Public

    Bacterial Annotation by Learned Representation Of Genes (C++ version)

    C++ 8

  5. markraken markraken Public archive

    Can marker representation improve speed and accuracy for metagenomic classification of long reads?

    C++

  6. Smaug Smaug Public archive

    (Sensitive Model-guided Annotation for Unsupervised Gene finding) Can transformers https://en.wikipedia.org/wiki/Transformer_(machine_learning_model) improve upon state-of-the-art bacterial gene fi…

    Jupyter Notebook

Repositories

Showing 7 of 7 repositories
  • PSAURON Public

    PSAURON is a machine learning model for rapid assessment of protein coding gene annotation

    salzberg-lab/PSAURON’s past year of commit activity
    Python 31 MIT 0 0 0 Updated Jan 12, 2025
  • PSAURON-cpu Public

    PSAURON with only CPU support

    salzberg-lab/PSAURON-cpu’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 17, 2024
  • bolotie Public

    SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity

    salzberg-lab/bolotie’s past year of commit activity
    C++ 13 4 4 0 Updated Aug 14, 2023
  • BalrogCPP Public

    Bacterial Annotation by Learned Representation Of Genes (C++ version)

    salzberg-lab/BalrogCPP’s past year of commit activity
    C++ 8 MIT 0 2 0 Updated Dec 5, 2022
  • Balrog Public

    Bacterial Annotation by Learned Representation of Genes

    salzberg-lab/Balrog’s past year of commit activity
    Jupyter Notebook 55 MIT 5 9 0 Updated Jan 22, 2021
  • Smaug Public archive

    (Sensitive Model-guided Annotation for Unsupervised Gene finding) Can transformers https://en.wikipedia.org/wiki/Transformer_(machine_learning_model) improve upon state-of-the-art bacterial gene finding tools?

    salzberg-lab/Smaug’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 9, 2019
  • markraken Public archive

    Can marker representation improve speed and accuracy for metagenomic classification of long reads?

    salzberg-lab/markraken’s past year of commit activity
    C++ 0 0 0 0 Updated Sep 26, 2019

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