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Ranganathan Lab

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  1. bmDCA bmDCA Public

    Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).

    C++ 34 14

  2. pySCA pySCA Public

    Python3 implementation of Statistical Coupling Analysis (SCA)

    Jupyter Notebook 13 3

  3. VAEforDesign VAEforDesign Public

    VAE for protein interpretation and design

    Jupyter Notebook 8

  4. Reverse_translation Reverse_translation Public

    Reverse translation to design genes from protein sequences.

    Jupyter Notebook 2

  5. pySCA-data pySCA-data Public

    Mirror of pySCA-data repository on GitLab.

  6. bmDCA-data bmDCA-data Public

    Multiple sequence alignments from matteofigliuzzi/bmDCA.

Repositories

Showing 10 of 12 repositories
  • BCAR Public
    ranganathanlab/BCAR’s past year of commit activity
    Python 0 0 0 0 Updated Jan 6, 2025
  • VAEforDesign Public

    VAE for protein interpretation and design

    ranganathanlab/VAEforDesign’s past year of commit activity
    Jupyter Notebook 8 MIT 0 0 0 Updated Jul 5, 2024
  • t-SNE Public

    t-SNE for SH3 domain explaining function and phylogeny relationships

    ranganathanlab/t-SNE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 8, 2023
  • Reverse_translation Public

    Reverse translation to design genes from protein sequences.

    ranganathanlab/Reverse_translation’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 30, 2023
  • Rouviere2023 Public
    ranganathanlab/Rouviere2023’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 23, 2022
  • SBM_py Public Forked from kleeorin/SBM_py

    Python Version of the Stochastic Boltzman Machine Inference for Protein Models

    ranganathanlab/SBM_py’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Jan 16, 2022
  • UndersamplingCoevolution Public Forked from kleeorin/UndersamplingCoevolution

    Containing computational routines to support article titled "Undersampling and the inference of coevolution in proteins"

    ranganathanlab/UndersamplingCoevolution’s past year of commit activity
    MATLAB 0 Apache-2.0 1 0 0 Updated Dec 2, 2021
  • SBM Public Forked from kleeorin/SBM

    Stochastic Quasi-Newton Optimizer using Boltzman Machine Updates for Protein Models

    ranganathanlab/SBM’s past year of commit activity
    C++ 0 1 0 0 Updated Jun 15, 2021
  • pySCA Public

    Python3 implementation of Statistical Coupling Analysis (SCA)

    ranganathanlab/pySCA’s past year of commit activity
    Jupyter Notebook 13 3 1 0 Updated Sep 7, 2020
  • bmDCA Public

    Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).

    ranganathanlab/bmDCA’s past year of commit activity
    C++ 34 GPL-3.0 14 5 0 Updated Aug 23, 2020
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