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    12 repositories

    • BCAR

      Public
      Python
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • VAEforDesign

      Public
      VAE for protein interpretation and design
      Jupyter Notebook
      •
      MIT License
      •0•8•0•0•Updated Jul 5, 2024Jul 5, 2024

    • t-SNE

      Public
      t-SNE for SH3 domain explaining function and phylogeny relationships
      Jupyter Notebook
      •0•0•0•0•Updated Apr 8, 2023Apr 8, 2023

    • Reverse_translation

      Public
      Reverse translation to design genes from protein sequences.
      Jupyter Notebook
      •0•2•0•0•Updated Mar 30, 2023Mar 30, 2023

    • Rouviere2023

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 23, 2022May 23, 2022

    • SBM_py

      Public
      Python Version of the Stochastic Boltzman Machine Inference for Protein Models
      Jupyter Notebook
      •2•0•0•0•Updated Jan 16, 2022Jan 16, 2022

    • UndersamplingCoevolution

      Public
      Containing computational routines to support article titled "Undersampling and the inference of coevolution in proteins"
      MATLAB
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 2, 2021Dec 2, 2021

    • SBM

      Public
      Stochastic Quasi-Newton Optimizer using Boltzman Machine Updates for Protein Models
      C++
      •1•0•0•0•Updated Jun 15, 2021Jun 15, 2021

    • pySCA

      Public
      Python3 implementation of Statistical Coupling Analysis (SCA)
      Jupyter Notebook
      •
      Other
      •3•13•1•0•Updated Sep 7, 2020Sep 7, 2020

    • bmDCA

      Public
      Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
      C++
      •
      GNU General Public License v3.0
      •14•34•5•0•Updated Aug 23, 2020Aug 23, 2020

    • bmDCA-data

      Public
      Multiple sequence alignments from matteofigliuzzi/bmDCA.
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 15, 2020Jan 15, 2020

    • pySCA-data

      Public
      Mirror of pySCA-data repository on GitLab.
      Other
      •0•0•0•0•Updated Oct 15, 2019Oct 15, 2019