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update notebook (#7) #21

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update notebook (#7)

update notebook (#7) #21

Workflow file for this run

.github/workflows/testing.yml at 3c87cb3
name: 'build'
on:
push:
branches:
- master
- main
- rnn-cnn-baseline
pull_request:
branches:
- master
- main
jobs:
check_same_deps:
name: Check pip and conda install same env
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Setup Python 3.8
uses: actions/setup-python@v2
with:
python-version: 3.8
- name: Install dependencies
run: pip install pyyaml
- name: Check same requirements
run: python .github/workflows/check_deps.py
build_conda:
name: Ubuntu conda
runs-on: "ubuntu-latest"
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
mamba-version: "*"
channels: conda-forge,defaults
channel-priority: true
activate-environment: anaconda-client-env
environment-file: environment.yml
python-version: 3.8
auto-activate-base: false
- name: Test conda
run: |
conda info
conda list
python download_data.py
ramp-test --quick-test
build_pip:
name: Linux pip
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.8
uses: actions/setup-python@v2
with:
python-version: 3.8
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 nbconvert[test]
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
if [ -f extra_libraries.txt ]; then pip install -r extra_libraries.txt; fi
- name: Test pip
run: |
flake8 *.py submissions/*/*.py
python download_data.py
ramp-test --quick-test
ramp-test --submission starting_kit --quick-test
jupyter nbconvert --execute brain_anatomy_schizophrenia_starting_kit.ipynb --to html --ExecutePreprocessor.kernel_name=python3