testing.yml

name: 'build'
on:
  push:
    branches:
      - master
      - main
      - rnn-cnn-baseline
  pull_request:
    branches:
      - master
      - main

jobs:
  check_same_deps:
    name: Check pip and conda install same env
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v2
      - name: Setup Python 3.8
        uses: actions/setup-python@v2
        with:
          python-version: 3.8
      - name: Install dependencies
        run: pip install pyyaml
      - name: Check same requirements
        run: python .github/workflows/check_deps.py

  build_conda:
    name: Ubuntu conda
    runs-on: "ubuntu-latest"
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - uses: actions/checkout@v2
      - uses: conda-incubator/setup-miniconda@v2
        with:
          mamba-version: "*"
          channels: conda-forge,defaults
          channel-priority: true
          activate-environment: anaconda-client-env
          environment-file: environment.yml
          python-version: 3.8
          auto-activate-base: false
      - name: Test conda
        run: |
          conda info
          conda list
          python download_data.py
          ramp-test --quick-test
  build_pip:
    name: Linux pip
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python 3.8
      uses: actions/setup-python@v2
      with:
        python-version: 3.8
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install flake8 nbconvert[test]
        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
        if [ -f extra_libraries.txt ]; then pip install -r extra_libraries.txt; fi
    - name: Test pip
      run: |
        flake8 *.py submissions/*/*.py
        python download_data.py
        ramp-test --quick-test
        ramp-test --submission starting_kit --quick-test
        jupyter nbconvert --execute brain_anatomy_schizophrenia_starting_kit.ipynb --to html --ExecutePreprocessor.kernel_name=python3