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Add parsers #90

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merged 61 commits into from
Jan 21, 2025
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10d3729
Add semantikon to the environment
samwaseda Jan 4, 2025
19876e7
update environment
samwaseda Jan 6, 2025
ebd3380
[dependabot skip] Update env file
pyiron-runner Jan 6, 2025
6e8d597
Forgot to add the parser
samwaseda Jan 6, 2025
ad45af4
remove python 3.9
samwaseda Jan 6, 2025
71ea04a
Merge branch 'add_parsers' of github.com:pyiron/pyiron_ontology into …
samwaseda Jan 6, 2025
09a09e4
run black
samwaseda Jan 6, 2025
e6d90ad
add tests
samwaseda Jan 6, 2025
e43109e
Make input and output plural to be in agreement with the pyiron_workf…
samwaseda Jan 9, 2025
c446523
small bugfixes
samwaseda Jan 9, 2025
cb421d1
set lower bound
samwaseda Jan 10, 2025
b6c61b2
Add rdflib
samwaseda Jan 10, 2025
888e25b
[dependabot skip] Update env file
pyiron-runner Jan 10, 2025
66bf6a7
add one test
samwaseda Jan 10, 2025
fa9d3b4
git push oMerge branch 'add_parsers' of github.com:pyiron/pyiron_onto…
samwaseda Jan 10, 2025
06daa09
update semantikon version
samwaseda Jan 11, 2025
f80549b
[dependabot skip] Update env file
pyiron-runner Jan 11, 2025
c6c47df
update definition of connection
samwaseda Jan 13, 2025
770e72f
bugfix
samwaseda Jan 13, 2025
d392643
another programming error worth a harakiri
samwaseda Jan 13, 2025
e229344
make sure that the triples are tuples
samwaseda Jan 13, 2025
c1be53f
bugfix
samwaseda Jan 13, 2025
1695fa7
set default values
samwaseda Jan 15, 2025
33f71a6
convert object to URIRef only if it is not already one
samwaseda Jan 15, 2025
0581c0c
typo
samwaseda Jan 15, 2025
662ea1a
There are arbitrary values that cannot work with if
samwaseda Jan 15, 2025
8af0169
allow triples in triple
samwaseda Jan 15, 2025
333191c
update semantikon version
samwaseda Jan 16, 2025
a25767c
separate out triple parser
samwaseda Jan 16, 2025
212f939
bugfix and add tests
samwaseda Jan 16, 2025
1fb1b0e
one more test for a full triple
samwaseda Jan 16, 2025
cd42a96
make it possible to give custom predicates
samwaseda Jan 16, 2025
38bb43c
experiment: use sameAs instead of comesFrom
samwaseda Jan 16, 2025
d8f0757
implement inherit properties
samwaseda Jan 16, 2025
918d141
make inherit properties a public function
samwaseda Jan 16, 2025
71eeed1
add restriction parser
samwaseda Jan 16, 2025
c18444b
[dependabot skip] Update env file
pyiron-runner Jan 16, 2025
bcf33dd
raise lower bound of semantikon
samwaseda Jan 17, 2025
eefe3fa
run black
samwaseda Jan 17, 2025
43a5009
add reasoner
samwaseda Jan 17, 2025
bc64153
Replace [] by None
samwaseda Jan 17, 2025
ed2d030
implement validator
samwaseda Jan 18, 2025
20fb3a8
Do not inherit type
samwaseda Jan 18, 2025
f4f8dd6
calculate number of iterations automatically
samwaseda Jan 18, 2025
7dbf3c2
adjust line length
samwaseda Jan 19, 2025
077c980
be more specific about the number of triples in tests
samwaseda Jan 19, 2025
a720944
Add tests (but not working right now)
samwaseda Jan 19, 2025
f34f52d
increase number of inheritances
samwaseda Jan 20, 2025
535aac1
Add wrong analysis
samwaseda Jan 20, 2025
3cd1f78
include owlrl in the environment
samwaseda Jan 20, 2025
73a2741
[dependabot skip] Update env file
pyiron-runner Jan 20, 2025
4dfe112
change lower bounds
samwaseda Jan 20, 2025
972ba6d
Another try
samwaseda Jan 20, 2025
28c7dd4
update pint version
samwaseda Jan 20, 2025
394b553
update lower bounds
samwaseda Jan 20, 2025
2224b59
Define each label as a named individual
samwaseda Jan 20, 2025
0b1d6e2
update semantikon version
samwaseda Jan 21, 2025
8b14555
[dependabot skip] Update env file
pyiron-runner Jan 21, 2025
5e8e52f
Name change in order to avoid confusion
samwaseda Jan 21, 2025
992d3e5
Codacy
samwaseda Jan 21, 2025
21112ec
Merge branch 'add_parsers' of github.com:pyiron/pyiron_ontology into …
samwaseda Jan 21, 2025
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remove python 3.9
samwaseda committed Jan 6, 2025

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commit ad45af4d6e5d6a7ae3f6373059a1d2728ccff1d5
3 changes: 2 additions & 1 deletion .github/workflows/push-pull.yml
Original file line number Diff line number Diff line change
@@ -12,7 +12,8 @@ jobs:
uses: pyiron/actions/.github/workflows/[email protected]
secrets: inherit
with:
python-version-alt3: 'exclude' # No python 3.9
docs-env-files: .ci_support/environment.yml .ci_support/environment-docs.yml
notebooks-env-files: .ci_support/environment.yml .ci_support/environment-pyiron_atomistics.yml .ci_support/environment-lammps.yml
tests-env-files: .ci_support/environment.yml .ci_support/environment-pyiron_atomistics.yml
alternate-tests-env-files: .ci_support/lower_bound.yml
alternate-tests-env-files: .ci_support/lower_bound.yml