Code

Add parsers#90

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samwaseda merged 61 commits intomainpyiron/pyiron_ontology:mainfrom add_parserspyiron/pyiron_ontology:add_parsersCopy head branch name to clipboardJan 21, 2025

+318-7

Commits

Commits on Jan 4, 2025

• Add semantikon to the environment

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Commits on Jan 6, 2025

• update environment

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• [dependabot skip] Update env file

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• Forgot to add the parser

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• remove python 3.9

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• Merge branch 'add_parsers' of github.com:pyiron/pyiron_ontology into add_parsers

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• run black

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• add tests

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Commits on Jan 9, 2025

• Make input and output plural to be in agreement with the pyiron_workflow definitions

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• small bugfixes

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Commits on Jan 10, 2025

• set lower bound

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• Add rdflib

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• [dependabot skip] Update env file

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• add one test

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• git push oMerge branch 'add_parsers' of github.com:pyiron/pyiron_ontology into add_parsers

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Commits on Jan 11, 2025

• update semantikon version

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• [dependabot skip] Update env file

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Commits on Jan 13, 2025

• update definition of connection

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• bugfix

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• another programming error worth a harakiri

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• make sure that the triples are tuples

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• bugfix

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Commits on Jan 15, 2025

• set default values

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• convert object to URIRef only if it is not already one

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• typo

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• There are arbitrary values that cannot work with if

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• allow triples in triple

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Commits on Jan 16, 2025

• update semantikon version

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• separate out triple parser

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• bugfix and add tests

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• one more test for a full triple

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• make it possible to give custom predicates

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• experiment: use sameAs instead of comesFrom

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• implement inherit properties

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• make inherit properties a public function

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• add restriction parser

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• [dependabot skip] Update env file

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Commits on Jan 17, 2025

• raise lower bound of semantikon

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• run black

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• add reasoner

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• Replace [] by None

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Commits on Jan 18, 2025

• implement validator

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• Do not inherit type

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• calculate number of iterations automatically

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Commits on Jan 19, 2025

• adjust line length

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• be more specific about the number of triples in tests

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• Add tests (but not working right now)

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Commits on Jan 20, 2025

• increase number of inheritances

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• Add wrong analysis

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• include owlrl in the environment

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• [dependabot skip] Update env file

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• change lower bounds

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• Another try

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• update pint version

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• update lower bounds

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• Define each label as a named individual

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Commits on Jan 21, 2025

• update semantikon version

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• [dependabot skip] Update env file

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• Name change in order to avoid confusion

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• Codacy

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• Merge branch 'add_parsers' of github.com:pyiron/pyiron_ontology into add_parsers

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