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135 Open 557 Closed
135 Open 557 Closed
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Issues list

Add Bos Indicus and Taurus model from Rossi et al. (2024) enhancement New feature or request
#1590 opened Nov 3, 2024 by gregorgorjanc
SLiM engine truncates the number of diploids to match generation 1
#1589 opened Nov 2, 2024 by hyanwong
beware of recapitation and missing data
#1584 opened Aug 22, 2024 by petrelharp Version 0.2.1
1
Document what sort of intervals contig.add_dfe expects
#1580 opened Jul 26, 2024 by nspope
should post-SLiM simplify have keep_input_roots=True?
#1579 opened Jul 25, 2024 by petrelharp
9
revisit ExtendedEvents docs
#1573 opened Jul 6, 2024 by petrelharp Version 0.2.1
@nspope
macos runners >12 won't support conda
#1568 opened Jul 5, 2024 by nspope
numpy v2 and requirements.txt
#1566 opened Jul 5, 2024 by petrelharp
1
Release 0.2.1 checklist enhancement New feature or request
#1565 opened Jul 1, 2024 by andrewkern
11 tasks
Version 0.2.1
3
SLiM Support in Windows enhancement New feature or request
#1563 opened May 28, 2024 by daikitag
3
document QC procedure for DFEs
#1557 opened Apr 16, 2024 by petrelharp
DFE for MusMus enhancement New feature or request
#1555 opened Mar 18, 2024 by peterdfields
10
orangutan model how to add adaptive introgression?
#1554 opened Mar 18, 2024 by h-pawar
1
change to pip install in dev docs
#1552 opened Mar 5, 2024 by petrelharp
Mutation model enhancement New feature or request good first issue Good for newcomers
#1546 opened Feb 16, 2024 by daikitag
1
Add detail about SLiM install to installation docs enhancement New feature or request
#1541 opened Nov 16, 2023 by hyanwong
2
What to do about shifting ensembl build?
#1521 opened Oct 10, 2023 by petrelharp Version 0.2.1
@andrewkern
11
test that requirements in setup.cfg are sufficient
#1518 opened Sep 18, 2023 by petrelharp
QC for new DFE: "generic" human DFE
#1507 opened Aug 14, 2023 by chriscrsmith Version 0.2.1
bug in adding mutations to the recapitated portion of the tree sequence
#1496 opened Jun 22, 2023 by mufernando Version 0.2.1
@petrelharp
4
QC for LogNormalDFE (HomSap) Model QC Quality control process for model addition
#1484 opened May 18, 2023 by RyanGutenkunst Version 0.2.1
add beneficial-containing DFE
#1469 opened Apr 25, 2023 by petrelharp
2
Add per-chromosome ploidy checks to test stubs in maintenance scripts
#1467 opened Apr 23, 2023 by nspope Version 0.2.1
@nspope
1
Vignette on sampling parameter values enhancement New feature or request
#1456 opened Mar 14, 2023 by RyanGutenkunst
3
CLI returning haploid samples, API diploid bug Something isn't working
#1451 opened Mar 9, 2023 by andrewkern Version 0.2.1
@nspope
6
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