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Add scigraph support to the clinical-text-analysis-extension #13

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Add scigraph support to the clinical-text-analysis-extension #13

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09e64b0
[misc] Update some dependencies.
Apr 27, 2016
d2f1f79
[misc] show entire sentences in the annotation context.
May 19, 2016
a113dd4
[misc] Whitespace changes
Jun 12, 2016
c678d4c
[misc] A variety of minor UI improvements.
Jun 12, 2016
8713b55
Add a scigraph based clinical text annotation module.
Jun 10, 2016
9877e6a
[misc] Had to re-release scigraph to get scigraph-services.
Jun 12, 2016
76da891
[misc] Remove some imports
Jun 14, 2016
c262725
[misc] Reset version to 1.0-SNAPSHOT
sdumitriu Jun 14, 2016
436eb06
[misc] Use 1.3-SNAPSHOT for upstream
sdumitriu Jun 14, 2016
5fcc6e1
[cleanup] Removed unused dependencies
sdumitriu Jun 14, 2016
450df05
[misc] Use the right version
sdumitriu Jun 14, 2016
0e1f342
[misc] CSS fix to solve spacing issue.
Jun 14, 2016
d1e85b9
[misc] Don't throw an error if certain panels are missing.
Jun 22, 2016
25403fc
Make the punctuation filter more robust, and split on newlines.
Jun 22, 2016
83f8dde
Merge branch 'develop' into staging
Jul 5, 2016
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6 changes: 1 addition & 5 deletions biolark/pom.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -86,6 +86,7 @@
<groupId>net.sf.json-lib</groupId>
<artifactId>json-lib</artifactId>
<classifier>jdk15</classifier>
<version>2.3</version>
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Ideally, the code should be updated to use the new org.json library instead of json-lib.

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Hmm after looking at it, I don't think the code actually uses json-lib at all, so we could probably take off that dependency.

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mvn dependency:analyze

</dependency>
<dependency>
<groupId>org.slf4j</groupId>
Expand Down Expand Up @@ -200,11 +201,6 @@
<artifactId>gson</artifactId>
<version>2.2.2</version>
</dependency>
<dependency>
<groupId>com.ibm.icu</groupId>
<artifactId>icu4j</artifactId>
<version>49.1</version>
</dependency>
<dependency>
<groupId>com.ibm.icu</groupId>
<artifactId>icu4j</artifactId>
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2 changes: 1 addition & 1 deletion pom.xml
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Expand Up @@ -23,7 +23,7 @@
<parent>
<groupId>org.phenotips</groupId>
<artifactId>phenotips-components</artifactId>
<version>1.2-SNAPSHOT</version>
<version>1.3-SNAPSHOT</version>
<relativePath />
</parent>
<artifactId>clinical-text-analysis-extension</artifactId>
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