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Issues: phenopolis/phenopolis_genomics_browser

Dahsboard APIs for statistics panel
#169 by YuanTian1991 was closed Nov 11, 2021
Closed 10
Make it easier for everyone to install
#376 opened Oct 27, 2021 by IsmailM
Open 2
Pagination for patient's variants
#388 opened Mar 2, 2022 by alanwilter
Open 1
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73 Open 135 Closed
73 Open 135 Closed
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Issues list

Build error - not possible to update website at the moment
#393 opened May 9, 2023 by pontikos
@YuanTian1991
How pagination should work from the frontend perspective? Frontend
#389 opened Mar 2, 2022 by alanwilter
@YuanTian1991 @IsmailM
3
Pagination for patient's variants Python API
#388 opened Mar 2, 2022 by alanwilter
@alanwilter
1
Flex "upload" function so users can define local system instead of S3 enhancement New feature or request Frontend help wanted Extra attention is needed Python API
#382 opened Dec 3, 2021 by alanwilter
@YuanTian1991 @alanwilter
@IsmailM @logust79
4
Add info/slides about "how data import framework works" in Phenopolis google drive doc help wanted Extra attention is needed TODO
#381 opened Dec 3, 2021 by alanwilter
@logust79
Create 3 pages like myPatient page showing all user available genes/hpo/variant enhancement New feature or request Frontend
#380 opened Dec 3, 2021 by alanwilter
@YuanTian1991 @IsmailM @logust79
Make it easier for everyone to install
#376 opened Oct 27, 2021 by IsmailM
3 of 5 tasks
@alanwilter
2
Proofreading Dashboard page Frontend
#372 opened Jun 11, 2021 by alanwilter Pre-CZI: Improve Frontend
@pontikos @IsmailM
Move text on Dashboard to translation.json
#370 opened Jun 3, 2021 by IsmailM
Add example page links on the Dashboard
#369 opened Jun 3, 2021 by IsmailM
2
Skeleton for Translation
#368 opened Jun 3, 2021 by IsmailM
Change Password
#367 opened Jun 3, 2021 by IsmailM
4 tasks
add pontikos-lab to footer good first issue Good for newcomers
#364 opened Jun 2, 2021 by pontikos
@aszabo08
1
demo user gene message is misleading demo_user
#362 opened Jun 1, 2021 by pontikos Pre-CZI: Improve Frontend
@YuanTian1991 @alanwilter
"Can not Fetch preview information" message should be "You are not permitted to view this patient" demo_user
#361 opened Jun 1, 2021 by pontikos Pre-CZI: Migration to new API (Fast API)
@alanwilter
2
change password for demo user needs to handle permission error
#360 opened Jun 1, 2021 by pontikos Pre-CZI: Improve Frontend
@YuanTian1991
Very long variants should be trimmed on page
#359 opened May 31, 2021 by pontikos Pre-CZI: Improve Frontend
@YuanTian1991
3
Email system to notify users that their data is ready to be viewed
#351 opened May 25, 2021 by pontikos A.3] Nextflow AWS Pipeline Frontend Management
Frontend dashboard will be implemented to track pipeline progress
#350 opened May 25, 2021 by pontikos A.3] Nextflow AWS Pipeline Frontend Management
Pipeline will be connected to the web interface so it can be launched and stopped
#349 opened May 25, 2021 by pontikos A.3] Nextflow AWS Pipeline Frontend Management
Implementation of Phenopacket standard to allow for exchange of phenotyping information
#348 opened May 25, 2021 by pontikos B.5] Interoperability with External Services
Import VCF files from PGP-UK
#347 opened May 25, 2021 by pontikos C.1] Import PGP-UK Data
Gnomad inconsistencies
#337 opened Apr 22, 2021 by alanwilter Pre-CZI: Migration to new db schema
@dvarrazzo @priesgo @pontikos
1
Import variants from multi-sample VCF (bgzipped)
#330 opened Apr 8, 2021 by logust79 Pre-CZI: Migration to new db schema
@dvarrazzo
1
some patients ids are in gene tables but do not exist
#329 opened Apr 7, 2021 by pontikos Pre-CZI: Migration to new db schema
@alanwilter
16
ProTip! Exclude everything labeled bug with -label:bug.