Closes #26 rename/rerun programs from admiral.test/admiralvaccine

[kaz462]

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[kaz462]

Summary of the updates:

1. replace dev folder by data-raw
2. remove prefix admiral_ in both programs and datasets
3. rename update_domain.R programs to domain.R
4. add programs for ex/cm/sv/ts/vs/dm (direct copy from CDISC pilot study)
5. add set.seed in pc.R/qs_ophtha.R to avoid changes for future rerun

@pharmaverse/admiraldata
I removed all raw_domain.rda data, and updated to read them directly from the URL. Do you see any issues with this approach? should we save a copy of the raw data under data-raw folder?

[manciniedoardo]

Thanks for working on this @kaz462 - there are a few things I would change in the individual scripts to make them tidier and more homogeneous, but as discussed yesterday for nowit's more important to get the package structure nailed down.

[bundfussr]

I removed all raw_domain.rda data, and updated to read them directly from the URL. Do you see any issues with this approach? should we save a copy of the raw data under data-raw folder?

I think that's OK because it is unlikely that the CDISC pilot data is removed or changed.