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Closes #2532 Update Forumula for Body Surface Area #2541

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@jimrothstein jimrothstein commented Oct 24, 2024

…dvs_params.R)

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@jimrothstein jimrothstein self-assigned this Oct 24, 2024
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github-actions bot commented Oct 24, 2024

Code Coverage

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Noticed use of else if structures, which is fine.
Any thought to switch instead; code often easier to read:

s <- function(h,w, type) {
  switch(type,
         "method a" = h+w,
         "method b" = h-w
    )
}

h=1
w=2

s(h,w, "method a")  #3
s(h,w, "method b")  # -1

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@jimrothstein could me a entry in our news.md on this update please?

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bms63 commented Oct 25, 2024

Noticed use of else if structures, which is fine. Any thought to switch instead; code often easier to read:

s <- function(h,w, type) {
  switch(type,
         "method a" = h+w,
         "method b" = h-w
    )
}

h=1
w=2

s(h,w, "method a")  #3
s(h,w, "method b")  # -1

switch is great - if you think it would make the code more readable lets make a new issue and discuss!! There is also an effort in all our date/time functions to make things more readable and less ifffy as we have some crazy cyclocamtic complexity going on there.

I would just stay focus on this minor documentation update for this PR and get this merged in.

Comment on lines 522 to 523
# The DuBois & DuBois formula expects the value of height in meters
# We need to convert from cm
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This comment should be removed now.

NEWS.md Outdated
- Replace use of `data("sdtm")` with `sdtm <- pharmaverse::sdtm` in templates and vignettes. (#2498)

## Updates of Existing Functions

- `compute_bsa(height, weight, method` - now uses improved version of DuBois-DuBois forumula for bsa (#2532)
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The wording could confuse users because they may assume that the results are different now.

Either we should state that the results are still the same or we shouldn't add a NEWS entry because the change is not user-facing.

@bms63 , what do you think?

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I think if no change for the user then lets suppress it from user-facing notes.

@jimrothstein lets move it to developer notes just so we remember when we updated - for posterity!

…m" to "m"

But the example data is still in "cm"
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jimrothstein commented Oct 29, 2024

The revised DuBois-DuBois forumula uses meters and not cm. The sample datasets still have cm units and I need to manually change.

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The revised DuBois-DuBois forumula uses meters and not cm. The sample datasets still have cm units and I need to manually change.

I don't think so. According to https://en.wikipedia.org/wiki/Body_surface_area#Calculation the formulas expect height in cm.
Using height in m doesn't look correct to me:

> height <- 170
> weight <- 75
> 0.007184 * height^0.725 * weight^0.425
[1] 1.863558
> height <- 1.70
> 0.007184 * height^0.725 * weight^0.425
[1] 0.06612152

#' in cm and `WEIGHT` is expected in kg:
#' in m and `WEIGHT` is expected in kg:
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Height is still expected in cm. Please undo this change here and below.

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Height is still expected in cm. Please undo this change here and below.
@bundfussr - my error! Will undo and correct (to cm)

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