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Merge pull request #361 from pangenome/update-stuff
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update wfmash
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AndreaGuarracino authored Dec 3, 2023
2 parents b26786a + d401758 commit e29b61a
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -46,7 +46,7 @@ RUN apt-get update \
RUN git clone --recursive https://github.com/waveygang/wfmash \
&& cd wfmash \
&& git pull \
&& git checkout ecdfb95e660eda46c3c51312a7db54394270271a \
&& git checkout 637f8ce1ebe5a928f664bd5e3dbf68476e02ca9a \
&& git submodule update --init --recursive \
&& sed -i 's/-march=native/-march=sandybridge/g' src/common/wflign/deps/WFA2-lib/Makefile \
&& cmake -H. -DCMAKE_BUILD_TYPE=Generic -DEXTRA_FLAGS='-march=sandybridge -Ofast' -Bbuild && cmake --build build -- -j $(nproc) \
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