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33 Open 137 Closed
33 Open 137 Closed
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Issues list

Not completed in overlap_collect step
#425 opened Nov 10, 2024 by kjyunm
PGGB takes more than 96 hours of walltime on HPC
#407 opened Sep 2, 2024 by kiratalreja3
1
How to handle plasmid sequences for bacterial assemblies
#406 opened Aug 30, 2024 by UpalabdhaD
Follow up on issues with Singularity
#404 opened Aug 16, 2024 by cjfields
6
PGGB singularity vg deconstruct not recognizing sample prefix
#399 opened Jun 7, 2024 by SimonaSecomandi
1
Recommended practices for downstream analyses
#394 opened Apr 27, 2024 by agolicz
Memory size required to build large genomes
#385 opened Apr 3, 2024 by Lucio-Yang
14
the effect of n_mappings question Further information is requested
#382 opened Mar 19, 2024 by subwaystation
seqwish fails when --output-dir contains commas enhancement New feature or request
#356 opened Nov 24, 2023 by kdm9
1
Command terminated by signal 8
#345 opened Oct 25, 2023 by clemgoub
2
the parameters to build pangenome for metagenomes
#337 opened Oct 17, 2023 by zwh82
2
How to handle when two contigs from the same assembly sligtly overlap
#329 opened Sep 15, 2023 by Isoris
7
'SN:Z' and 'SO:i' tags for segments/nodes
#328 opened Sep 5, 2023 by songbowang125
1
Use of pggb to generate alignments for phylogenomics
#319 opened Jul 26, 2023 by sivico26
2
Even if the genome is small, shouldn't too many samples be added to build the graph
#316 opened Jun 28, 2023 by Wwwwwwwyc
8
Converting to a single connected component
#310 opened Jun 22, 2023 by JoshuaDanielRubin
2
Building a better pangenome
#306 opened Jun 18, 2023 by GeorgeBGM
25
gfa2evaluation
#297 opened May 15, 2023 by subwaystation
Command terminated by signal 9
#292 opened Apr 13, 2023 by Zoeyoungxy
7
pggb versioning info causing git dubious ownership problems
#288 opened Mar 27, 2023 by colindaven
Richer SV Annotation
#284 opened Mar 13, 2023 by mgperry
Possible community detection bug
#277 opened Jan 16, 2023 by subwaystation
5
Building a graph from fragmented assemblies
#268 opened Dec 13, 2022 by evcurran
3
High heterogeneity in sequences identity
#247 opened Nov 9, 2022 by lsoldini
2
PGGB use case with hexaploidy genomes question Further information is requested
#238 opened Oct 3, 2022 by brettChapman
1
ProTip! Exclude everything labeled bug with -label:bug.