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Merge pull request #354 from kdm9/usagefix
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fix typo in usage regarding --no-splits
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AndreaGuarracino committed Nov 23, 2023
2 parents 96d5270 + 11232fe commit a71a369
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2 changes: 1 addition & 1 deletion pggb
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Expand Up @@ -191,7 +191,7 @@ if [ "$show_help" == true ]; then
echo " -p, --map-pct-id PCT percent identity for mapping/alignment [default: "$MAP_PCT_ID"]"
echo " -c, --n-mappings N number of mappings for each segment [default: 1]"
echo " -g, --hg-filter-ani-diff N filter out mappings unlikely to be N% less than the best mapping [default: "$HG_FILTER_ANI_DIFF"%]"
echo " -N, --no-split disable splitting of input sequences during mapping [default: enabled]"
echo " -N, --no-splits disable splitting of input sequences during mapping [default: enabled]"
echo " -x, --sparse-map N keep this fraction of mappings ('auto' for giant component heuristic) [default: 1.0]"
echo " -K, --mash-kmer N kmer size for mapping [default: "$MASH_KMER"]"
echo " -F, --mash-kmer-thres N ignore the top % most-frequent kmers [default: "$MASH_KMER_THRES"]"
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