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    41 repositories

    • rootlets-informed-reg2template

      Public
      Spinal rootlets-informed registration to the template
      MIT License
      •0•1•3•0•Updated Oct 25, 2024Oct 25, 2024

    • contrast-agnostic-softseg-spinalcord

      Public
      Contrast-agnostic spinal cord segmentation project with softseg
      Python
      •
      MIT License
      •3•4•32•1•Updated Oct 24, 2024Oct 24, 2024

    • fmri-segmentation

      Public
      Repository for the project on automatic spinal cord segmentation based on fMRI EPI data
      Python
      •
      MIT License
      •1•4•26•0•Updated Oct 2, 2024Oct 2, 2024

    • balgrist-sci

      Public
      Pipeline for processing SCI patients using SCT
      Python
      •
      MIT License
      •0•2•2•0•Updated Sep 18, 2024Sep 18, 2024

    • csa-atrophy

      Public
      Evaluate the sensitivity of atrophy detection with SCT
      Python
      •
      MIT License
      •0•1•15•3•Updated Aug 27, 2024Aug 27, 2024

    • dcm-oklahoma

      Public
      Analysis of DCM structural MRI and qMRI of the spinal cord
      MIT License
      •0•1•0•0•Updated Jul 31, 2024Jul 31, 2024

    • STOP-MS-data

      Public
      Compute CSA on upper spinal cord on MPRAGE from large MS cohort from Karolinska Institute.
      Shell
      •
      MIT License
      •0•0•3•0•Updated Jul 26, 2024Jul 26, 2024

    • spine-park

      Public
      Pipeline for multicontrast analysis in PD patients
      Shell
      •
      MIT License
      •0•0•8•0•Updated Jul 9, 2024Jul 9, 2024

    • mri-linac-longitudinal-registration

      Public
      This project investigates the stability of spinal cord positioning across MRI-LINAC sessions
      MIT License
      •0•0•1•0•Updated Jun 29, 2024Jun 29, 2024

    • levin-stroke

      Public
      Repository for levin-stroke project.
      Shell
      •
      MIT License
      •0•0•1•0•Updated Jun 22, 2024Jun 22, 2024

    • bavaria-quebec

      Public
      Bavaria (TUM) and Quebec (Polytechnique) collaboration on a project on spinal cord MS lesion segmentation.
      Shell
      •
      MIT License
      •1•6•8•0•Updated May 2, 2024May 2, 2024

    • dcm-metric-normalization

      Public
      Python
      •
      MIT License
      •0•0•3•0•Updated Mar 26, 2024Mar 26, 2024

    • epi-ap-pa-registration

      Public
      FMRI AP-PA registration to quantify EPI distortion
      Jupyter Notebook
      •0•0•2•1•Updated Nov 6, 2023Nov 6, 2023

    • pmj-based-csa

      Public
      CSA measure based on distance from pontomedullary junction (PMJ)
      Python
      •
      MIT License
      •0•2•2•0•Updated Aug 23, 2023Aug 23, 2023

    • venus-integration

      Public
      Code to process data for integrating acquisition planning with VENUS
      Python
      •
      MIT License
      •0•0•0•0•Updated May 22, 2023May 22, 2023

    • ukbiobank-spinalcord-csa

      Public
      Measure of the averaged cross-sectional area (cord CSA) between C2 and C3 of the spinal cord with UK Biobank Brain MRI dataset.
      Python
      •
      MIT License
      •1•3•12•0•Updated Apr 25, 2023Apr 25, 2023

    • cord-erosion

      Public
      Pipeline to erode the spinal cord mask in order to quantify MS lesions from the subpial surface.
      Shell
      •0•2•2•1•Updated Dec 20, 2022Dec 20, 2022

    • normative-metrics

      Public
      Processing scripts for computation of qMRI metrics
      Python
      •
      MIT License
      •0•1•5•0•Updated Jul 16, 2022Jul 16, 2022

    • cervical_sc_study

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • gm-challenge-data

      Public
      Dataset for the gray matter acquisition challenge
      Creative Commons Zero v1.0 Universal
      •1•3•3•0•Updated Jan 25, 2022Jan 25, 2022

    • gm-challenge

      Public
      Spinal cord gray matter imaging challenge
      Python
      •
      MIT License
      •3•8•3•1•Updated Jan 25, 2022Jan 25, 2022

    • vertebral-labeling-validation

      Public
      Pipeline to validate the performance of new vertebral labeling methods.
      Python
      •0•1•1•0•Updated Oct 31, 2021Oct 31, 2021

    • pediatric-genova

      Public
      Image analysis pipeline for neonatal Spinal Cord MRI data from University of Genoa in collaboration with Gaslini Children's Hospital.
      pipelinespinal-corddkineonatal
      Shell
      •
      MIT License
      •1•1•0•0•Updated Oct 15, 2021Oct 15, 2021

    • template-pa78

      Public
      Repository with code to generate the PA78 template.
      MIT License
      •1•0•6•0•Updated Jul 26, 2021Jul 26, 2021

    • inspired

      Public
      Spinal cord analysis scripts based on SCT
      Shell
      •
      MIT License
      •2•2•4•1•Updated Dec 23, 2020Dec 23, 2020

    • exvivo-template

      Public
      Repository for generating high resolution ex-vivo MRI template.
      Python
      •0•0•1•0•Updated Aug 13, 2020Aug 13, 2020

    • tumor-segmentation

      Public
      Pipeline for the segmentation of spinal tumors
      Jupyter Notebook
      •0•1•1•1•Updated Jul 11, 2020Jul 11, 2020

    • manual-labeling

      Public
      Scripts to loop over multiple subjects and perform manual labeling for use in machine learning projects.
      MIT License
      •0•0•2•1•Updated May 27, 2020May 27, 2020

    • ke-berkeley

      Public
      Pipeline to process DWI data
      Shell
      •
      MIT License
      •1•1•0•0•Updated Apr 4, 2020Apr 4, 2020

    • deepseg-threshold

      Public
      Find appropriate threshold for each contrast with deepseg algorithm
      Jupyter Notebook
      •
      MIT License
      •1•0•2•0•Updated Oct 19, 2019Oct 19, 2019