Xinglab

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33 repositories

ProteoSeq
Public
Python
•0•0•0•0•Updated Oct 16, 2024Oct 16, 2024
rmats-turbo
Public
C++
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Other
•55•228•182•1•Updated Oct 3, 2024Oct 3, 2024
rMATS-long
Public
Python
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Other
•2•23•3•0•Updated Aug 22, 2024Aug 22, 2024
rmats2sashimiplot
Public
Python
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GNU General Public License v2.0
•54•135•29•0•Updated Aug 20, 2024Aug 20, 2024
IRIS
Public
IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
rna-seq immunotherapy neoantigen tumor-antigen rna-splicing
Python
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Other
•9•24•10•0•Updated Aug 20, 2024Aug 20, 2024
espresso
Public
Python
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Other
•4•58•10•0•Updated Aug 5, 2024Aug 5, 2024
TideHunter
Public
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing seed-and-chain partial-order-alignment
C
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MIT License
•2•19•8•0•Updated Jun 17, 2024Jun 17, 2024
DARTS
Public
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
Python
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Other
•32•110•17•0•Updated Feb 7, 2024Feb 7, 2024
isoCirc
Public
isoCirc
Python
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GNU General Public License v3.0
•4•10•5•0•Updated Nov 27, 2023Nov 27, 2023
TEQUILA-seq
Public
The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.
Python
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Other
•0•8•1•0•Updated Sep 5, 2023Sep 5, 2023
abPOA
Public
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd long-reads multiple-sequence-alignment partial-order-alignment banded-dp consensus-sequence
C
•
MIT License
•3•13•0•0•Updated Jul 20, 2023Jul 20, 2023
rmats-turbo-tutorial
Public
HTML
•3•1•0•0•Updated May 12, 2023May 12, 2023
lr2rmats
Public
Long read to rMATS
C
•
GNU General Public License v3.0
•6•31•3•0•Updated May 5, 2023May 5, 2023
sparks
Public
R
•0•0•0•0•Updated Apr 19, 2023Apr 19, 2023
PAIRADISE
Public
Paired Replicate Analysis of Allelic Differential Splicing Events
Python
•4•11•3•0•Updated Feb 21, 2023Feb 21, 2023
iDARTS
Public
Predicting splicing effects of human genome variants from sequences
Python
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Other
•0•1•0•0•Updated Sep 23, 2022Sep 23, 2022
PEGASAS
Public
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
rna-seq cancer alternative-splicing signaling-pathways tumor-progression
Python
•11•18•1•0•Updated Jun 16, 2022Jun 16, 2022
SPIRIT
Public
Perl
•0•0•0•0•Updated Apr 11, 2022Apr 11, 2022
Myc-regulated_AS_PrCa_paper
Public
Scripts for plotting figures and running analysis throughout the manuscript
R
•4•11•0•0•Updated Nov 2, 2021Nov 2, 2021
CLAM
Public
CLIP-seq Analysis of Multi-mapped reads
expectation-maximization peak-caller iclip peak clip-seq rip-seq eclip
Python
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GNU General Public License v3.0
•6•28•5•0•Updated Jul 20, 2021Jul 20, 2021
siri
Public
Python
•1•4•0•0•Updated Jun 8, 2021Jun 8, 2021
intron-retention-paper
Public
Jupyter Notebook
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MIT License
•2•3•0•0•Updated Mar 2, 2021Mar 2, 2021
GTEx-brain-sQTL
Public
R
•5•12•0•0•Updated Jun 2, 2020Jun 2, 2020
GLiMMPS
Public
GLiMMPS
R
•1•6•0•1•Updated Oct 8, 2019Oct 8, 2019
SQUID
Public
Stringent Quantitation of Unspliced Intron by Deep-sequencing
rna-seq intron-retention intron-pi
Python
•
GNU General Public License v3.0
•2•2•0•0•Updated Sep 16, 2019Sep 16, 2019
ASPRIN
Public
Python
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GNU General Public License v3.0
•1•3•0•0•Updated Jul 24, 2019Jul 24, 2019
rMATS-DVR
Public
Python
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GNU General Public License v3.0
•13•18•3•0•Updated Jan 17, 2019Jan 17, 2019
SURVIV
Public
Survival Analysis of mRNA Isoform Variation
Python
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Other
•7•6•1•0•Updated Oct 31, 2018Oct 31, 2018
Xinglab.github.io
Public
HTML
•0•1•0•0•Updated Sep 27, 2018Sep 27, 2018
SEASTAR
Public
SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
Python
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GNU General Public License v3.0
•5•13•2•0•Updated Jan 21, 2018Jan 21, 2018