Repositories list

• gene-name-mapping

  Public
  Code wrapped into a UIMA component that maps gene names found in scientific literature to NCBI Gene human gene IDs.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•1•1•Updated Oct 3, 2024Oct 3, 2024

• java-stdio-ipc

  Public
  This is a small Java programm that uses the `ProcessBuilder` to call a Python programm on the command line and exchange data with it via standard input/output channels.

  Java

  •

  BSD 2-Clause "Simplified" License

  •3•10•0•1•Updated Oct 3, 2024Oct 3, 2024

• jcore-pipeline-modules

  Public
  Create JCoRe UIMA pipelines with a command line interface and run them using an auto-generated XML configuration file.

  nlppipelinesuima+ 1jcore

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•4•1•Updated Oct 3, 2024Oct 3, 2024

• jcore-parent-pom

  Public
  The Parent POM of the JCoRe project.

  BSD 2-Clause "Simplified" License

  •0•0•0•1•Updated Oct 3, 2024Oct 3, 2024

• JeSemE

  Public
  Jena Semantic Explorer

  natural-language-processingdigital-humanitiesdiachronic

  Java

  •

  MIT License

  •3•11•8•0•Updated Oct 2, 2024Oct 2, 2024

• gepi

  Public
  GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).

  retrievalinteractionsmolecular+ 3ppibionlpwebapplication

  JavaScript

  •

  GNU General Public License v3.0

  •0•1•60•0•Updated Sep 20, 2024Sep 20, 2024

• julielab-neo4j-server-plugins

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •0•1•3•1•Updated Jul 4, 2024Jul 4, 2024

• smithsearch

  Public
  A search engine for medical German text created in the context of the SMITH project.

  Java

  •

  BSD 2-Clause "Simplified" License

  •1•1•2•0•Updated Jun 10, 2024Jun 10, 2024

• gnormplus

  Public
  Code adaptions for the GNormPlus gene mapper (https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/gnormplus/)

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated May 22, 2024May 22, 2024

• jcore-base

  Public
  Base modules of JCoRe

  Java

  •

  BSD 2-Clause "Simplified" License

  •11•22•21•7•Updated May 20, 2024May 20, 2024

• jcore-dependencies

  Public
  Dependencies for JCoRe Base

  Java

  •

  BSD 2-Clause "Simplified" License

  •2•4•4•5•Updated Mar 21, 2024Mar 21, 2024

• julielab-topic-modeling

  Public
  This is the master thesis implementation work of Philipp Sieg.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•1•0•1•Updated Mar 21, 2024Mar 21, 2024

• julielab-java-utilities

  Public
  A collection of small commonly useful utilities and helpers for Java.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•4•3•1•Updated Mar 21, 2024Mar 21, 2024

• tar2zip

  Public
  A small Java program to convert tar.gz files into ZIP archives.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•1•0•1•Updated Feb 21, 2024Feb 21, 2024

• jcore-projects

  Public
  Pre-built projects with models for JCoRe Base modules

  Java

  •

  BSD 2-Clause "Simplified" License

  •2•7•6•0•Updated Feb 20, 2024Feb 20, 2024

• julielab.github.io

  Public
  The JULIE Lab home page

  nlpeducationinformation-retrieval+ 3text-miningresearchcomputational-linguistics

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Jan 29, 2024Jan 29, 2024

• julielab-json-tools

  Public
  Easily extract information on the command line from JSON files via JsonPath.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•1•Updated Jan 22, 2024Jan 22, 2024

• costosys

  Public
  The Corpus Storage System (CoStoSys) is a tool and abstraction layer for a PostgreSQL document database and part of the Jena Document Information System (JeDIS).

  annotationdatabasemedline

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•4•0•1•Updated Jun 14, 2023Jun 14, 2023

• julielab-ranklib-mallet

  Public
  A MALLET interface for the RankLib fork of the JULIE Lab.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•1•Updated Jun 14, 2023Jun 14, 2023

• julielab-parent-pom

  Public
  The top Maven Parent POM for all JULIE Lab projects.

  0•0•0•1•Updated May 9, 2023May 9, 2023

• julielab-elastic-query-components

  Public
  A set of Java classes to facilitate ElasticSearch query formulation and to aid in modular search process modeling.

  Java

  •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

• jufit

  Public
  Jena UMLS Filter - filters and enhances UMLS Files

  Java

  •

  Other

  •2•4•1•0•Updated Feb 24, 2023Feb 24, 2023

• elasticsearch-mapper-preanalyzed

  Public
  An ElasticSearch mapper plugin that allows to index preanalyzed TokenStreams, i.e. to circumvent an index analyzer in ElasticSearch and instead specifying each token to be indexed separately.

  Java

  •

  Apache License 2.0

  •2•3•0•4•Updated Feb 21, 2023Feb 21, 2023

• julielab-concept-db-manager

  Public
  A project that organizes the insertion of (ontological) concepts into a Neo4j graph database.

  Java

  •0•0•0•0•Updated Jan 23, 2023Jan 23, 2023

• polar

  Public
  A web application to extract co-occurrence relations between predefined lists of disease and medication terms.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Dec 27, 2022Dec 27, 2022

• julielab-maven-aether-utilities

  Public
  The Eclipse Aether library offers support for the representation of Maven artifacts, they download and upload to repositories, the retrieval of (transitive) dependency information and much more. This projects offers a few high-level methods that are supposed to help in common usecases when accessing Maven repositories.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Dec 18, 2022Dec 18, 2022

• JEmAS

  Public
  Java

  •

  GNU General Public License v3.0

  •4•11•0•0•Updated Dec 15, 2022Dec 15, 2022

• wordEmotions

  Public
  Python

  •

  MIT License

  •0•4•0•0•Updated Dec 15, 2022Dec 15, 2022

• EmoMap

  Public
  Code and data associated with our LREC 2018 and COLING 2018 papers on converting between emotion formats

  Python

  •

  MIT License

  •5•7•0•0•Updated Dec 15, 2022Dec 15, 2022

• HistEmo

  Public
  Jupyter Notebook

  •1•3•0•0•Updated Dec 15, 2022Dec 15, 2022