Repositories list

• interactiveGraphing

  Public
  Using python, Plotly and dash to visualize informatics data.

  Python

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• 2024_Toth_Bimpatiens

  Public
  R

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• bioinformatics-workbook

  Public
  Bioinformatics Workbook repository

  bioinformatics

  HTML

  •

  MIT License

  •89•174•5•6•Updated Oct 15, 2024Oct 15, 2024

• datascience-workbook

  Public
  Introduction to large scale computing and data wrangling with hands-on tutorials

  pythonlinuxcli+ 13rjuliaproject-managementcloud-computingresearch-projectdata-wranglingdevelopment-environment+ 6

  HTML

  •

  MIT License

  •5•15•0•0•Updated Oct 9, 2024Oct 9, 2024

• geospatialworkbook

  Public
  Tutorials for the informatics on geographical information

  Jupyter Notebook

  •7•7•0•1•Updated Aug 14, 2024Aug 14, 2024

• Repo_skeleton

  Public
  Default files to copy over to a new Repo

  8•8•0•0•Updated Aug 12, 2024Aug 12, 2024

• 2024_Baum_SCN_Protease_Collaboration

  Public
  0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• scinet-workbooks-devel

  Public
  JavaScript

  •

  Other

  •5•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• common_scripts

  Public
  my bin directory

  Perl

  •44•43•2•0•Updated Apr 26, 2024Apr 26, 2024

• B_dahlbomii_Genome_And_Annotation

  Public
  0•1•0•0•Updated Apr 4, 2024Apr 4, 2024

• scinet-workbooks-gif

  Public
  JavaScript

  •

  Other

  •5•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• data_graphing

  Public
  ready-made python-Plotly applications for data visualization

  HTML

  •1•0•0•0•Updated Dec 21, 2023Dec 21, 2023

• geo_utils

  Public
  The collection of small Python-based utilities for geospatial analysis

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

• data_wrangling

  Public
  mini python applications for common tasks in data processing

  Python

  •0•1•0•0•Updated May 3, 2023May 3, 2023

• 2022_Bean_mergeData

  Public
  Add matching labels from the reference 2-column file of label pairs.

  Python

  •0•0•1•0•Updated Mar 22, 2023Mar 22, 2023

• 101workbook

  Public
  This is the index page for anyone that tries the main domain name and can't remember the subdomain names

  HTML

  •0•1•0•0•Updated Jan 12, 2023Jan 12, 2023

• ideogram_db

  Public
  HTML

  •0•0•0•0•Updated Oct 26, 2022Oct 26, 2022

• AI-workbook

  Public
  AI workbook to put tutorials

  HTML

  •

  MIT License

  •1•0•0•0•Updated Sep 16, 2022Sep 16, 2022

• SequelQC

  Public
  PacBio quality check program specifically for Sequel platform

  R

  •

  GNU General Public License v3.0

  •2•8•2•0•Updated Sep 2, 2022Sep 2, 2022

• scinet-site

  Public
  A prototype of the USDA-ARS Website

  HTML

  •

  Other

  •120•0•0•0•Updated Jul 18, 2022Jul 18, 2022

• elk_genomics

  Public
  Elk Genome Assembly project

  Roff

  •0•3•0•0•Updated Oct 26, 2021Oct 26, 2021

• Zengyi-2021-ScheffersomycesStipitis

  Public
  0•0•0•0•Updated Oct 1, 2021Oct 1, 2021

• common_analyses

  Public
  Repository of common bioinformatics scripts

  Shell

  •24•38•1•0•Updated Sep 21, 2021Sep 21, 2021

• Dovetail2SCNGenome

  Public
  Dovetail2 H. glycines genome analyses -- falcon,falcon-unzip, scaffolding

  1•3•82•0•Updated Jul 14, 2021Jul 14, 2021

• SequelTools

  Public
  new repo

  Shell

  •

  GNU General Public License v3.0

  •6•27•13•0•Updated May 18, 2021May 18, 2021

• 2021_workshop_transcriptomics

  Public
  Public repo for the exploration of transcriptomic analyses post DGE list generation.

  HTML

  •3•4•0•0•Updated May 6, 2021May 6, 2021

• SingleCellRNAseq_RyanSmith

  Public
  0•0•0•0•Updated Mar 12, 2021Mar 12, 2021

• orise_miniproject

  Public
  0•0•0•0•Updated Oct 2, 2020Oct 2, 2020

• swift

  Public
  Swift bioinformatic scripts

  Swift

  •0•0•0•0•Updated Aug 3, 2020Aug 3, 2020

• 2020-06_Beattie_TRN

  Public
  Create a container to run TRN as it has many dependencies.

  Shell

  •0•0•0•0•Updated Jul 16, 2020Jul 16, 2020