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Dovetail2 H. glycines genome analyses -- falcon,falcon-unzip, scaffolding

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72 Commits
368ScaffoldSCNGenome
368ScaffoldSCNGenome
 
 
01_iadhoreSyntenyNewDovetailGenome.md
01_iadhoreSyntenyNewDovetailGenome.md
 
 
02_Dovetail2To2968Genome.md
02_Dovetail2To2968Genome.md
 
 
03_Dovetail2Blobotools.md
03_Dovetail2Blobotools.md
 
 
04_RepeatModelerDovetail2.md
04_RepeatModelerDovetail2.md
 
 
05_RibosomalArrays.md
05_RibosomalArrays.md
 
 
06_MummerDovetail2Self.md
06_MummerDovetail2Self.md
 
 
07_NCBIDataAlignmentDovetail2.md
07_NCBIDataAlignmentDovetail2.md
 
 
08_Scaffolding&GapFillingDovetail2SCNgenome.md
08_Scaffolding&GapFillingDovetail2SCNgenome.md
 
 
09_Juicer.md
09_Juicer.md
 
 
10_BUSCO_Comparisons.md
10_BUSCO_Comparisons.md
 
 
11_RedoSSPACEscaffolding.md
11_RedoSSPACEscaffolding.md
 
 
12_PilonIterations.md
12_PilonIterations.md
 
 
13_GenePrediction.md
13_GenePrediction.md
 
 
13_GenePredictionSTOP4-24-20.md
13_GenePredictionSTOP4-24-20.md
 
 
13a_GenePrediction_PrepareAlignments.md
13a_GenePrediction_PrepareAlignments.md
 
 
13b_GenePrediction_PreparatoryAssembliesAndPredictions.md
13b_GenePrediction_PreparatoryAssembliesAndPredictions.md
 
 
13c1_GenePrediction_InitialMikadoGenePredictionMergedCufflinks.md
13c1_GenePrediction_InitialMikadoGenePredictionMergedCufflinks.md
 
 
13c_GenePrediction_IntialMikadoGenePrediction.md
13c_GenePrediction_IntialMikadoGenePrediction.md
 
 
13d_GenePrediction_FinalGenePrediction.md
13d_GenePrediction_FinalGenePrediction.md
 
 
13e_GenePrediction_FilterGenes.md
13e_GenePrediction_FilterGenes.md
 
 
13e_GenePrediction_GeneStatistics.md
13e_GenePrediction_GeneStatistics.md
 
 
14_EffectorIdentification.md
14_EffectorIdentification.md
 
 
15_PacBioReadMapping.md
15_PacBioReadMapping.md
 
 
15_ReadMappingForCompleteness.md
15_ReadMappingForCompleteness.md
 
 
16_Synteny.md
16_Synteny.md
 
 
17_IadhoreSynteny.md
17_IadhoreSynteny.md
 
 
18_FunctionalAnnotationAndEnrichment.md
18_FunctionalAnnotationAndEnrichment.md
 
 
19_MummerSynteny.md
19_MummerSynteny.md
 
 
20_RunRepeatPredictions.md
20_RunRepeatPredictions.md
 
 
21_RedTandem_Tandem_Repeat_Identification.md
21_RedTandem_Tandem_Repeat_Identification.md
 
 
22_1_Alignment_and_Alignment_Statistics.md
22_1_Alignment_and_Alignment_Statistics.md
 
 
22_DifferentialExpression_mRNA.md
22_DifferentialExpression_mRNA.md
 
 
22a_DifferentialExpression_Gene.md
22a_DifferentialExpression_Gene.md
 
 
22b_DifferentialExpressionMultipleMapp_Gene.md
22b_DifferentialExpressionMultipleMapp_Gene.md
 
 
23_CompileGeneCharacteristics.md
23_CompileGeneCharacteristics.md
 
 
24_predictNLSSignals.md
24_predictNLSSignals.md
 
 
26_SignalP.md
26_SignalP.md
 
 
31_RenamingScaffoldsAndGenes.md
31_RenamingScaffoldsAndGenes.md
 
 
32_AddFunctionalAnnotationsToGFF.md
32_AddFunctionalAnnotationsToGFF.md
 
 
33_AssessEffectorsInX12.md
33_AssessEffectorsInX12.md
 
 
34_Synteny_Dotplot.md
34_Synteny_Dotplot.md
 
 
35_Buscov5.12.md
35_Buscov5.12.md
 
 
36_AssemblathonAndBuscoHistory.md
36_AssemblathonAndBuscoHistory.md
 
 
37_HiCDensityInvestigation.md
37_HiCDensityInvestigation.md
 
 
38_GrabLowQualityGenesNTEs.md
38_GrabLowQualityGenesNTEs.md
 
 
Materials_Methods.md
Materials_Methods.md
 
 
README.md
README.md
 
 

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Dovetail2SCNGenome

Dovetail2 H. glycines genome analyses -- falcon,falcon-unzip, scaffolding

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Dovetail2 H. glycines genome analyses -- falcon,falcon-unzip, scaffolding

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