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    13 repositories

    • GSEA.jl

      Public
      Julia implementation of the next generation GSEA 🏔️
      clibioinformaticsgenejuliacomputational-biologyrnacommand-line-toolsingle-cellgene-set-enrichmentmsigdb
      Julia
      •3•32•4•0•Updated Feb 5, 2025Feb 5, 2025

    • gsea-desktop

      Public
      Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).
      Java
      •
      Other
      •13•36•28•0•Updated Feb 4, 2025Feb 4, 2025

    • gsea2-gpmodule

      Public
      GenePattern Module wrapper for the next generation GSEA
      Python
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • ensembl-genes

      Public
      Extract the Ensembl genes catalog to simple tables
      Python
      •
      Other
      •4•0•0•0•Updated May 13, 2024May 13, 2024

    • collapsedataset-gpmodule

      Public
      A GenePattern module for running GSEA's CollapseDataset utility
      Shell
      •
      Other
      •1•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • gsea-gpmodule

      Public
      A GenePattern module for running the GSEA method
      Shell
      •
      Other
      •2•1•0•0•Updated Dec 20, 2022Dec 20, 2022

    • gseapreranked-gpmodule

      Public
      A GenePattern module for running the GSEA Preranked method
      Shell
      •
      Other
      •1•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • ssGSEA-gpmodule

      Public
      A GenePattern module for running the ssGSEA method
      R
      •
      Other
      •7•12•0•0•Updated Dec 20, 2022Dec 20, 2022

    • gsea-leadingedgereport-gpmodule

      Public
      A GenePattern module for running GSEA's LeadingEdge report creator
      Shell
      •
      Other
      •0•0•0•0•Updated Oct 3, 2022Oct 3, 2022

    • chip2chip-gpmodule

      Public
      A GenePattern module for running GSEA's Chip2Chip utility
      Shell
      •
      Other
      •0•0•0•0•Updated Oct 3, 2022Oct 3, 2022

    • msigdb-xml-browser

      Public
      The MSigDB XML Browser is a free utility for exploring the MSigDB XML file.
      Java
      •
      Other
      •0•0•0•0•Updated Jan 21, 2022Jan 21, 2022

    • GSEA_R

      Public
      Updated implementation of the GSEA-P R application for modern R distributions
      R
      •
      Other
      •36•94•5•0•Updated Nov 30, 2021Nov 30, 2021

    • ssGSEAProjection-gpmodule

      Public
      A GenePattern module for running the ssGSEAProjection method
      Other
      •0•0•0•0•Updated Feb 25, 2020Feb 25, 2020