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    19 repositories

    • SimPol

      Public
      HTML
      •
      MIT License
      •1•1•0•0•Updated Feb 12, 2025Feb 12, 2025

    • phast

      Public
      PHAST
      C
      •
      Other
      •26•72•8•3•Updated Dec 16, 2024Dec 16, 2024

    • RPHAST

      Public
      RPHAST: Phylogenetic Analysis with Space/Time Models in R
      C
      •
      Other
      •3•11•1•0•Updated Nov 25, 2024Nov 25, 2024

    • FitCons2

      Public
      C++
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•0•Updated Jul 10, 2024Jul 10, 2024

    • DENR

      Public
      Select the most actively transcribed transcript model using PRO-seq
      R
      •
      MIT License
      •5•3•0•1•Updated Jun 26, 2024Jun 26, 2024

    • LASSIE

      Public
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•2•0•0•Updated May 23, 2024May 23, 2024

    • LINSIGHT

      Public
      C++
      •
      BSD 2-Clause "Simplified" License
      •9•25•1•0•Updated May 23, 2024May 23, 2024

    • bat_genome_analysis

      Public
      Python
      •0•3•0•0•Updated Feb 11, 2024Feb 11, 2024

    • arg-selection

      Public
      ARG-based inference of selection using deep learning
      Python
      •3•18•2•0•Updated Aug 31, 2023Aug 31, 2023

    • argweaver

      Public
      Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
      C++
      •
      MIT License
      •19•13•7•0•Updated May 1, 2023May 1, 2023

    • UniMod

      Public
      R
      •
      MIT License
      •2•2•0•0•Updated Nov 15, 2022Nov 15, 2022

    • extraINSIGHT

      Public
      A model for quantifying rare variant depletion by pooling data across a set of genomic regions
      Python
      •0•1•0•0•Updated Jun 13, 2022Jun 13, 2022

    • ACE

      Public
      ACE: Analysis of CRISPR Essentiality in R
      R
      •
      MIT License
      •0•0•1•0•Updated Sep 8, 2021Sep 8, 2021

    • nascentRNASim

      Public
      A package for empirical simulation of nascent RNA data
      R
      •
      MIT License
      •2•2•0•0•Updated Jul 11, 2021Jul 11, 2021

    • bird_capuchino_analysis

      Public
      R
      •1•4•0•0•Updated Nov 11, 2020Nov 11, 2020

    • argweaver-d-analysis

      Public
      Scripts for Hubisz et al 2019 "Mapping gene flow between ancient hominins..."
      R
      •2•8•2•0•Updated Oct 2, 2019Oct 2, 2019

    • superEnhancerModelR

      Public
      Super-enhancer modeling package based off analysis from Dukler at al. (2017)
      R
      •1•6•0•0•Updated Sep 13, 2018Sep 13, 2018

    • super-enhancer-code

      Public
      Code for Nature Genetics correspondance, "Is a super-enhancer greater than the sum of its parts?" (2016).
      R
      •2•8•0•0•Updated Mar 29, 2018Mar 29, 2018

    • tuSelecter

      Public
      R
      •0•1•0•0•Updated May 30, 2017May 30, 2017