Merge pull request #27 from openproblems-bio/switch_to_json

switch to json to align with v1
openproblems-bio · Dec 19, 2022 · cec4711 · cec4711
2 parents a117e62 + 41209fa
commit cec4711
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Showing 42 changed files with 10,375 additions and 4,881 deletions.
diff --git a/_quarto.yml b/_quarto.yml
@@ -79,6 +79,14 @@ website:
             - results_v2/denoising/metrics.qmd
             - results_v2/denoising/api.qmd
             - results_v2/denoising/normalization.qmd
+        - text: Dimensionality reduction
+          contents: 
+            - href: results_v2/dimensionality_reduction/index.qmd
+              text: Description
+            - results_v2/dimensionality_reduction/methods.qmd
+            - results_v2/dimensionality_reduction/metrics.qmd
+            - results_v2/dimensionality_reduction/api.qmd
+            - results_v2/dimensionality_reduction/normalization.qmd
         - text: Label projection
           contents: 
             - href: results_v2/label_projection/index.qmd

diff --git a/results_v2/denoising/api.qmd b/results_v2/denoising/api.qmd
@@ -14,12 +14,12 @@ strip_margin <- function(text, symbol = "\\|") {
 dir <- "results_v2/label_projection"
 dir <- "."
 
-api <- yaml::read_yaml(paste0(dir, "/api.yaml"))
+api <- jsonlite::read_json(paste0(dir, "/data/api.json"), simplifyVector = TRUE)
 
-comp_file <- map_df(api$comp_file_io, as_tibble)
-comp_info <- map_df(api$comp_info, as_tibble)
-file_info <- map_df(api$file_info, as_tibble)
-file_slot <- map_df(api$file_schema, as_tibble)
+comp_file <- api$comp_file_io
+comp_info <- api$comp_info
+file_info <- api$file_info
+file_slot <- api$file_schema
 ```
 
 

diff --git a/results_v2/denoising/api.yaml b/results_v2/denoising/api.yaml