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@openproblems-bio

Open Problems in Single-Cell Analysis

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  1. openproblems openproblems Public

    Formalizing and benchmarking open problems in single-cell genomics

    Shell 322 81

  2. website website Public

    Website hosted at https://openproblems.bio

    TeX 3 7

Repositories

Showing 10 of 34 repositories
  • task_batch_integration Public
    openproblems-bio/task_batch_integration’s past year of commit activity
    Python 1 MIT 2 3 4 Updated Jan 8, 2025
  • task_predict_modality Public

    Predicting the profiles of one modality (e.g. protein abundance) from another (e.g. mRNA expression).

    openproblems-bio/task_predict_modality’s past year of commit activity
    R 0 MIT 0 0 4 Updated Jan 8, 2025
  • task_label_projection Public

    Automated cell type annotation from rich, labeled reference data

    openproblems-bio/task_label_projection’s past year of commit activity
    Python 0 MIT 0 1 2 Updated Jan 8, 2025
  • website Public

    Website hosted at https://openproblems.bio

    openproblems-bio/website’s past year of commit activity
    TeX 3 CC-BY-4.0 7 32 (1 issue needs help) 12 Updated Jan 7, 2025
  • task_ist_preprocessing Public
    openproblems-bio/task_ist_preprocessing’s past year of commit activity
    Python 5 MIT 0 1 1 Updated Jan 6, 2025
  • task_grn_inference Public
    openproblems-bio/task_grn_inference’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jan 5, 2025
  • task_cyto_batch_integration Public
    openproblems-bio/task_cyto_batch_integration’s past year of commit activity
    Shell 1 MIT 1 1 0 Updated Dec 21, 2024
  • task_dimensionality_reduction Public
    openproblems-bio/task_dimensionality_reduction’s past year of commit activity
    Python 0 MIT 1 5 0 Updated Dec 20, 2024
  • task_perturbation_prediction Public

    A benchmark on predicting how small molecules change gene expression in different cell types.

    openproblems-bio/task_perturbation_prediction’s past year of commit activity
    Python 3 MIT 2 5 3 Updated Dec 19, 2024
  • task_denoising Public

    Removing noise in sparse single-cell RNA-sequencing count data

    openproblems-bio/task_denoising’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Dec 19, 2024
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