add linux dependency #4
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| on: | |
| push: | |
| branches: [main] | |
| name: Render porject | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| steps: | |
| - name: install linux dependencies | |
| run: | | |
| apt-get install libfontconfig1-dev | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "4.3" | |
| use-public-rspm: true | |
| - name: Install system dependencies for igraph | |
| run: sudo apt-get update && sudo apt-get install -y libglpk40 | |
| - name: Set up environment | |
| run: | | |
| echo "LINUX_VERSION=$(uname -rs)" >> $GITHUB_ENV | |
| - name: Cache Python packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: renv/python/virtualenvs/renv-python-3.10 | |
| key: python-${{env.LINUX_VERSION}}-${{ env.pythonLocation }}-${{ hashFiles('requirements.txt') }} | |
| restore-keys: python-${{env.LINUX_VERSION}}-${{ env.pythonLocation }}- | |
| - uses: r-lib/actions/setup-renv@v2 | |
| - uses: viash-io/viash-actions/setup@v6 | |
| - name: Install Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| version: 1.5.57 | |
| - name: If PR, cache several directories | |
| if: github.event_name == 'pull_request' | |
| uses: actions/cache@v4 | |
| with: | |
| key: quarto-${{ github.ref_name }} | |
| restore-keys: quarto | |
| path: | | |
| .quarto | |
| _docs | |
| _freeze | |
| - name: Render with Quarto | |
| shell: bash -l {0} | |
| run: | | |
| quarto render --profile evaluate_code | |
| - name: Clean up | |
| shell: bash -l {0} | |
| run: | | |
| rm -rf !(_docs) | |
| rm .gitignore !(_docs) | |
| rm -rf .quarto !(_docs) | |
| rm .gitmodules !(_docs) | |
| rm .renvignore !(_docs) | |
| rm .Rprofile !(_docs) | |
| rm -rf .github !(_docs) | |
| mv _docs/* . | |
| rm -rf _docs | |
| - name: Deploy to target branch | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_branch: "render/main" | |
| publish_dir: . |