Template: add option to exclude citations for custom pipeline template #7437
mirpedrolAnnotations
43 warnings
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Get test file matrix
The process '/usr/bin/git' failed with exit code 128
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Run test_cli.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_cli.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_lint_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_lint_utils.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_list.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_test_utils.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create_logo.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_create_logo.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_utils.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_refgenie.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_refgenie.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_sync.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_sync.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_params_file.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_params_file.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_bump_version.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_bump_version.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_launch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_launch.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_schema.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_schema.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_create_app.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create_app.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_download.py with Python 3.12 on ubuntu-latest
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run test_download.py with Python 3.12 on ubuntu-latest
The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Run test_download.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_download.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_lint.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_modules.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_modules.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_subworkflows.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_subworkflows.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_components.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_components.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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coverage
Codecov: Failed to properly create commit: The process '/home/runner/work/_actions/codecov/codecov-action/5ecb98a3c6b747ed38dc09f787459979aebb39be/dist/codecov' failed with exit code 1
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coverage
The process '/usr/bin/git' failed with exit code 128
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Artifacts
Produced during runtime
| Name | Size | |
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coverage_test_bump_version.py
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5.04 KB |
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coverage_test_cli.py
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6.9 KB |
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coverage_test_components.py
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6.42 KB |
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coverage_test_create.py
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6.42 KB |
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coverage_test_create_app.py
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5.05 KB |
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coverage_test_create_logo.py
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4.96 KB |
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coverage_test_download.py
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6.65 KB |
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coverage_test_launch.py
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6.54 KB |
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coverage_test_lint.py
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6.91 KB |
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coverage_test_lint_utils.py
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4.95 KB |
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coverage_test_list.py
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4.98 KB |
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coverage_test_modules.py
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7.07 KB |
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coverage_test_params_file.py
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5.1 KB |
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coverage_test_refgenie.py
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5.01 KB |
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coverage_test_schema.py
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6.49 KB |
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coverage_test_subworkflows.py
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6.87 KB |
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coverage_test_sync.py
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6.47 KB |
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coverage_test_test_utils.py
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6.33 KB |
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coverage_test_utils.py
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6.43 KB |
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