Specify pScreenAdjusted argument depending on analysis method #272

Job	Run time
Run full pipeline with test data (23.04.0)	17m 18s
Run DEXSeq pipeline with test data (23.04.0)	13m 19s
Run full pipeline with test data (latest-everything)	17m 40s
Run edgeR pipeline with test data (23.04.0)	9m 41s
Run DEXSeq pipeline with test data (latest-everything)	13m 19s
Run edgeR pipeline with test data (latest-everything)	9m 41s
Run full pipeline with FASTQ data (23.04.0)	17m 38s
Run full pipeline with FASTQ data (latest-everything)	17m 40s
Run full pipeline with genome BAM data (23.04.0)	10m 40s
Run rMATS pipeline with test data (23.04.0)	13m 12s
Run full pipeline with genome BAM data (latest-everything)	10m 55s
Run rMATS pipeline with test data (latest-everything)	12m 30s
Run full pipeline with Salmon results data (23.04.0)	4m 51s
Run full pipeline with Salmon results data (latest-everything)	3m 25s
Run SUPPA pipeline with test data (23.04.0)	11m 32s
Run SUPPA pipeline with test data (latest-everything)	11m 25s
Run full pipeline with transcriptome BAM data (23.04.0)	4m 26s
Run full pipeline with transcriptome BAM data (latest-everything)	4m 57s
	3h 24m 9s

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