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Migrate purgedups/calcuts to nf-test #8556

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Merged
merged 5 commits into from
May 27, 2025

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LouisLeNezet
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PR checklist

Closes #7671
Closes #8471

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@LouisLeNezet LouisLeNezet requested a review from SPPearce May 27, 2025 12:53
@github-project-automation github-project-automation bot moved this from Todo to In Progress in nf-test Migration May 27, 2025
@SPPearce SPPearce enabled auto-merge May 27, 2025 12:59
@SPPearce
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Had to add the meta map to the stub btw, else it doesn't have a prefix set correctly.

@SPPearce SPPearce added this pull request to the merge queue May 27, 2025
Merged via the queue into nf-core:master with commit 0b2f8f8 May 27, 2025
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@github-project-automation github-project-automation bot moved this from In Progress to Done in nf-test Migration May 27, 2025
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nf-test migration: purgedups/calcuts
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