parabricks/applybqsr version updated and tests migrated to nf-test #16899
mashehutest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-test with GPUs
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
4 errors and 2 warnings
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nf-test with GPUs (modules/nf-core/parabricks/fq2bam, singularity)
The process '/usr/bin/sudo' failed with exit code 100
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nf-test with GPUs (modules/nf-core/parabricks/applybqsr, singularity)
The process '/usr/bin/sudo' failed with exit code 100
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nf-test with GPUs (modules/nf-core/parabricks/fq2bammeth)
Process completed with exit code 1.
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nf-test with GPUs (modules/nf-core/parabricks/fq2bam, docker_self_hosted)
Process completed with exit code 1.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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