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Fix: Use a consistent country name across usvi samples both submitted to genbank and not yet #41

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merged 2 commits into from
Mar 4, 2024
+26 −26
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Fix: Use a consistent country name across usvi samples both submitted to genbank and not yet #41

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26daab4
Switch from Usvi to USVI
j23414 Feb 26, 2024
04387cd
Label all "Virgin Islands" records as "USVI"
j23414 Feb 26, 2024
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2 changes: 1 addition & 1 deletion ingest/defaults/geolocation-rules.tsv
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Original file line number Diff line number Diff line change
@@ -1 +1 @@

North America/Virgin Islands/*/* North America/USVI/*/*
50 changes: 25 additions & 25 deletions phylogenetic/data/metadata_usvi.tsv
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accession strain date region country division location length authors institution url
VI44 USVI/44/2016 2016-10-17 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI20_12plex USVI/20/2016 2016-10-13 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI41 USVI/41/2016 2016-11-10 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI32_12plex USVI/32/2016 2016-08-11 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI12 USVI/12/2016 2016-11-04 North America Usvi Saint Croix Saint Croix 10636 Black et al fh https://github.com/blab/zika-usvi/
VI46 USVI/46/2016 2016-07-15 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI23_12plex USVI/23/2016 2016-07-12 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI28_1d USVI/28/2016 2016-11-28 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI45 USVI/45/2016 2016-08-03 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI37 USVI/37/2016 2016-10-06 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI39_12plex USVI/39/2016 2016-11-09 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI36 USVI/36/2016 2016-09-13 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI34 USVI/34/2016 2016-08-01 North America Usvi Saint Thomas Saint Thomas 10792 Black et al fh https://github.com/blab/zika-usvi/
VI11 USVI/11/2016 2016-03-22 North America Usvi Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/
VI6 USVI/6/2016 2016-10-19 North America Usvi Saint John Saint John 10636 Black et al fh https://github.com/blab/zika-usvi/
VI3 USVI/3/2016 2016-09-26 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI27_1d USVI/27/2016 2016-08-19 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI13 USVI/13/2016 2016-08-13 North America Usvi Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/
VI7 USVI/7/2016 2016-10-27 North America Usvi Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/
VI38 USVI/38/2016 2016-10-25 North America Usvi Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI19_12plex USVI/19/2016 2016-11-21 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI1_1d USVI/1/2016 2016-09-28 North America Usvi Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI42 USVI/42/2016 2016-10-26 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI30_1d USVI/30/2016 2016-08-07 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI2 USVI/2/2016 2016-09-28 North America Usvi Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI44 USVI/44/2016 2016-10-17 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI20_12plex USVI/20/2016 2016-10-13 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI41 USVI/41/2016 2016-11-10 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI32_12plex USVI/32/2016 2016-08-11 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI12 USVI/12/2016 2016-11-04 North America USVI Saint Croix Saint Croix 10636 Black et al fh https://github.com/blab/zika-usvi/
VI46 USVI/46/2016 2016-07-15 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI23_12plex USVI/23/2016 2016-07-12 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI28_1d USVI/28/2016 2016-11-28 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI45 USVI/45/2016 2016-08-03 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI37 USVI/37/2016 2016-10-06 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI39_12plex USVI/39/2016 2016-11-09 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI36 USVI/36/2016 2016-09-13 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI34 USVI/34/2016 2016-08-01 North America USVI Saint Thomas Saint Thomas 10792 Black et al fh https://github.com/blab/zika-usvi/
VI11 USVI/11/2016 2016-03-22 North America USVI Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/
VI6 USVI/6/2016 2016-10-19 North America USVI Saint John Saint John 10636 Black et al fh https://github.com/blab/zika-usvi/
VI3 USVI/3/2016 2016-09-26 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI27_1d USVI/27/2016 2016-08-19 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI13 USVI/13/2016 2016-08-13 North America USVI Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/
VI7 USVI/7/2016 2016-10-27 North America USVI Saint Thomas Saint Thomas 10636 Black et al fh https://github.com/blab/zika-usvi/
VI38 USVI/38/2016 2016-10-25 North America USVI Saint Thomas Saint Thomas 10807 Black et al fh https://github.com/blab/zika-usvi/
VI19_12plex USVI/19/2016 2016-11-21 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI1_1d USVI/1/2016 2016-09-28 North America USVI Saint Croix Saint Croix 10792 Black et al fh https://github.com/blab/zika-usvi/
VI42 USVI/42/2016 2016-10-26 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI30_1d USVI/30/2016 2016-08-07 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/
VI2 USVI/2/2016 2016-09-28 North America USVI Saint Croix Saint Croix 10807 Black et al fh https://github.com/blab/zika-usvi/