Skip to content
@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

Pinned Loading

  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 270 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 162

Repositories

Showing 10 of 94 repositories
  • ncov-clades-schema Public

    Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain

    nextstrain/ncov-clades-schema’s past year of commit activity
    JavaScript 10 8 4 3 Updated Dec 25, 2024
  • hmpv Public

    Human metapneumovirus pathogen build

    nextstrain/hmpv’s past year of commit activity
    Python 0 0 1 0 Updated Dec 25, 2024
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 162 238 (4 issues need help) 33 Updated Dec 24, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 270 AGPL-3.0 128 240 (1 issue needs help) 54 Updated Dec 23, 2024
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 8 1 Updated Dec 20, 2024
  • dengue Public

    Nextstrain build for dengue virus

    nextstrain/dengue’s past year of commit activity
    Python 8 11 13 (1 issue needs help) 1 Updated Dec 20, 2024
  • yellow-fever Public
    nextstrain/yellow-fever’s past year of commit activity
    Python 0 4 2 2 Updated Dec 20, 2024
  • oropouche Public

    Oropouche Nextstrain build

    nextstrain/oropouche’s past year of commit activity
    Python 1 0 0 0 Updated Dec 20, 2024
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 45 MIT 19 27 7 Updated Dec 20, 2024
  • ncov-ingest Public

    A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

    nextstrain/ncov-ingest’s past year of commit activity
    Python 36 MIT 20 31 8 Updated Dec 20, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…