ingest-to-phylogenetic: Add phylogenetic job

nextstrain · Mar 26, 2024 · a5c7cbb · a5c7cbb
1 parent 0598392
commit a5c7cbb
Showing 1 changed file with 19 additions and 0 deletions.
diff --git a/.github/workflows/ingest-to-phylogenetic.yaml b/.github/workflows/ingest-to-phylogenetic.yaml
@@ -29,3 +29,22 @@ jobs:
         ingest/benchmarks/
         ingest/logs/
         ingest/.snakemake/log/
+
+  # TKTK check if ingest results include new data
+  # potentially use actions/cache to store Metadata.sha256sum of S3 files
+
+  phylogenetic:
+    needs: [ingest]
+    permissions:
+      id-token: write
+    uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
+    secrets: inherit
+    with:
+      runtime: docker
+      run: |
+        nextstrain build \
+          --env AWS_ACCESS_KEY_ID \
+          --env AWS_SECRET_ACCESS_KEY \
+          phylogenetic \
+            deploy_all \
+            --configfile build-configs/nextstrain-automation/config.yaml