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71 Open 351 Closed
71 Open 351 Closed
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Issues list

Properly handle CSV-like TSVs
#1165 opened Dec 6, 2024 by joverlee521
Highlight currently circulating viruses enhancement New feature or request
#1143 opened Aug 16, 2024 by genehack
@trvrb
2
Improve / standardize the way that we pass through default parameters and build-specific parameters enhancement New feature or request
#1131 opened Jul 26, 2024 by trvrb
6
Define workflow dependencies
#1118 opened Jun 25, 2024 by victorlin
Rename master to main enhancement New feature or request
#1116 opened Jun 13, 2024 by genehack
Port CI to pathogen-repo-ci GH Action workflow enhancement New feature or request
#1109 opened May 24, 2024 by genehack
1
representation of a nuc conversion do not point a conversion on the genome bug Something isn't working
#1107 opened May 7, 2024 by huzuner
4
Dataset JSONs are not minified bug Something isn't working
#1098 opened Feb 15, 2024 by tsibley
Add 16 NSPs
#1081 opened Aug 21, 2023 by jameshadfield
tests/different-inputs.t is outdated and unused
#1061 opened Apr 18, 2023 by victorlin
1
can't install to native needs information Requires information from the submitter
#1053 opened Mar 27, 2023 by shujiuli
4
dev: Document example accepted docker image formats for action enhancement New feature or request
#1051 opened Mar 17, 2023 by corneliusroemer
1
2
after skip_diagnostics: true modification. next strain fails bug Something isn't working
#1035 opened Dec 1, 2022 by Valentin-Bio-zz
3
Discussion: Do we still need the snp_clusters param for diagnostics rule? source: discussion forum Issue mentioned on Nextstrain Discussions
#1017 opened Oct 17, 2022 by joverlee521
3
ENH: Simple reversion coloring to allow inspection of interesting/problematic parts of tree enhancement New feature or request
#1015 opened Oct 14, 2022 by corneliusroemer
@corneliusroemer
ENH: Reconstruct Nextclade Pango Lineage on internal nodes enhancement New feature or request
#1011 opened Oct 6, 2022 by corneliusroemer
feat: WDL overhaul for Dockstore and Terra enhancement New feature or request
#1005 opened Sep 26, 2022 by j23414
5 of 8 tasks
@j23414
ENH: Add S1 mutations, reversion count and other branch colorings enhancement New feature or request
#985 opened Jul 24, 2022 by corneliusroemer
@corneliusroemer
Delete pre-computed, downloaded input files on workflow completion on AWS Batch
#961 opened Jun 10, 2022 by tsibley
Memory resource constraints are not passed to IQ-TREE (via augur tree) bug Something isn't working
#949 opened May 17, 2022 by AdrianLimaG
1
3
annotate_metadata_with_index raises ValueError when dtypes don't match bug Something isn't working easy problem Requires less work than most issues
#948 opened May 13, 2022 by joverlee521
1
@huddlej
Visualise omicron recombinants
#915 opened Apr 13, 2022 by jameshadfield
2
Fetching Open workflow intermediate build assets over S3 gives a 403 error in a really simple setup bug Something isn't working
#909 opened Apr 10, 2022 by sacundim
3
Document color schemes enhancement New feature or request source: office hours Issue mentioned during office hours
#901 opened Mar 29, 2022 by huddlej
1
Update configuration guide documentation Improvements or additions to documentation
#900 opened Mar 28, 2022 by victorlin
2 tasks
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