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Add phylogenetic directory#18

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kimandrews merged 10 commits intomainnextstrain/measles:mainfrom add-phylogeneticnextstrain/measles:add-phylogeneticCopy head branch name to clipboardMar 1, 2024

+356-264

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Commits on Feb 22, 2024

• Move phylogenetic workflow to a phylogenetic directory

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• Move rules for preparing sequences to its own smk file

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• Move rules for constructing phylogeny to its own smk file

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• Move rules for annotating phylogeny to its own smk file

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• Move rule for exporting auspice json to its own smk file

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Commits on Feb 23, 2024

• Update the CI workflow

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Commits on Feb 26, 2024

• Update README.md files to match new workflow structure

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• Add top-level nextstrain-pathogen.yaml

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Commits on Mar 1, 2024

• Reduce header content for snakemake rules

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• Update ChangeLog

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