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cdc_titer_column_map: set sr_lot to serum_id
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The CDC uses the lot numbers in the `sr_lot` column to discuss titer
measurements, so it makes more sense to use the lot numbers as the
`serum_id`.

This commit also removes the mapping for `sr_ferret` to `ferret_id`
because the `read_flat` method within `tdb/parse` assigns this
`ferret_id` to the `serum_id`, which would overwrite the lot number.
Since we don't need the ferret id as the serum id anymore, there's no
reason to include it in the mapping.

Resolves #126.
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joverlee521 committed Nov 18, 2022
1 parent bcf3a46 commit 7450be6
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions source-data/cdc_titer_column_map.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,7 @@ ag_cdc_id virus_cdc_id
ag_strain_name virus_strain
ag_passage virus_strain_passage
sr_strain_name serum_strain
sr_ferret ferret_id
sr_lot lot_number
sr_lot serum_id
sr_passage serum_antigen_passage
test_date assay_date
test_subtype subtype
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