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Update host map #118

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Jan 6, 2025
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Merged

Update host map #118

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daf15ce
Update host map
joverlee521 Jan 6, 2025
c6418e6
Fix annotation formatting
joverlee521 Jan 6, 2025
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3 changes: 1 addition & 2 deletions ingest/build-configs/ncbi/defaults/annotations.tsv
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Expand Up @@ -13,5 +13,4 @@ A/House-Mouse/USA/24-014782-003/2024 division New Mexico # Based on https://wahi
A/PETFOOD/USA/24-037325-011/2024 host Avian # This sequence is likely from cat food, which is turkey https://apps.oregon.gov/oregon-newsroom/OR/ODA/Posts/Post/morasch-meats-voluntary-recall-feline-raw-pet-food-hpai
A/PETFOOD/USA/24-037325-012/2024 host Avian # This sequence is likely from cat food, which is turkeyy https://apps.oregon.gov/oregon-newsroom/OR/ODA/Posts/Post/morasch-meats-voluntary-recall-feline-raw-pet-food-hpai
A/PETFOOD/USA/24-037325-013/2024 host Avian # This sequence is likely from cat food, which is turkey https://apps.oregon.gov/oregon-newsroom/OR/ODA/Posts/Post/morasch-meats-voluntary-recall-feline-raw-pet-food-hpai
A/Washington/OR/24-037325-011/2024 host Avian # This sequence is from Pet Food; like above it's likely turkey
A/Tiger/CA/24-036321-001-original/2024 host Nonhuman Mammal # New mammal, Panthera tigris
A/Washington/OR/24-037325-011/2024 host Avian # This sequence is from Pet Food; like above it's likely turkey
10 changes: 10 additions & 0 deletions ingest/build-configs/ncbi/defaults/host-map.tsv
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Expand Up @@ -14,6 +14,7 @@ Aythya americana Avian
bald eagle Avian
black billed magpie Avian
blackbird Avian
BOBCAT Nonhuman Mammal
Bos taurus Cattle
Branta canadensis Avian
Bubo virginianus Avian
Expand Down Expand Up @@ -49,6 +50,7 @@ feline Nonhuman Mammal
Felis catus Nonhuman Mammal
Gallus gallus Avian
ganada goose Avian
GEOFFROY'S CAT Nonhuman Mammal
goat Nonhuman Mammal
goose Avian
grackle Avian
Expand All @@ -64,27 +66,35 @@ House-Mouse Nonhuman Mammal
Icteridae Avian
Larus occidentalis Avian
Lophodytes cucullatus Avian
LYNX Nonhuman Mammal
mallard Avian
Meleagris gallopavo Avian
Mephitidae Nonhuman Mammal
mountain lion Nonhuman Mammal
mountain_lion Nonhuman Mammal
Mus musculus Nonhuman Mammal
mute swan Avian
Numididae sp. Avian
Panthera leo Nonhuman Mammal
Panthera tigris Nonhuman Mammal
Passer domesticus Avian
Pavo Avian
pefa Avian
Pelecanus erythrorhynchos Avian
pigeon Avian
Podiceps auritus Avian
Procyon lotor Nonhuman Mammal
Quiscalus quiscula Avian
raccoon Nonhuman Mammal
red fox Nonhuman Mammal
red tailed hawk Avian
Rock Pigeon Avian
SAVANNAH CAT Nonhuman Mammal
SERVAL Nonhuman Mammal
skunk Nonhuman Mammal
snow goose Avian
Streptopelia decaocto Avian
Sus scrofa Nonhuman Mammal
tiger Nonhuman Mammal
Turdus merula Avian
turkey Avian
Expand Down
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