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adding in D1.1 spillovers into exclude file for current cattle outbre…
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…ak build, which should be focused on B3.13
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@lmoncla
lmoncla committed Feb 14, 2025
1 parent d597b2d commit 3f66676
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Showing 7 changed files with 406 additions and 3 deletions.
177 changes: 177 additions & 0 deletions clade-labeling/h5n1-clades.tsv
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Expand Up @@ -27941,3 +27941,180 @@ A/largebilledcrow/Hokkaido/0112F073/2024 2.3.4.4b
A/chicken/USA/035506004/2024 2.3.4.4b
A/Europeanherringgull/Netherlands/4/2024 EA-nonGsGD
A/dairycow/USA/036136001/2024 ?
A/turkey/Minnesota/24037987001/2024 2.3.4.4b
A/chicken/Arkansas/24038151001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03031/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03323/2023 2.3.4.4b
A/chicken/Nebraska/24037436001/2024 2.3.4.4b
A/chicken/Iowa/24037489002/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV04258/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03711/2023 2.3.4.4b
A/dairycow/California/24032196001R2/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03522/2023 2.3.4.4b
A/chicken/Mississippi/24038164001/2024 2.3.4.4b
A/Duck/BC/FAV034212022 2.3.4.4b
A/chicken/Nebraska/24037518001/2024 2.3.4.4b
A/chicken/Iowa/24037491001/2024 2.3.4.4b
A/chicken/SouthDakota/24037531001/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV04261/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03034/2023 2.3.4.4b
A/turkey/SouthDakota/24037528001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03032/2023 2.3.4.4b
A/chicken/Iowa/24036502002/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV03862/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03941/2023 2.3.4.4b
A/pheasant/Kansas/24037794006/2024 2.3.4.4b
A/pheasant/Kansas/24037794001/2024 2.3.4.4b
A/Chicken/BC/FAV033712022 2.3.4.4b
A/Turkey/BritishColumbia/FAV03331/2023 2.3.4.4b
A/chicken/Iowa/24037491002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03684/2023 2.3.4.4b
A/duck/Oregon/24037944001/2024 2.3.4.4b
A/pheasant/Kansas/24037794008/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03102/2023 2.3.4.4b
A/Gallusgallus/Belgium/010680002/2025 2.3.4.4b
A/Turkey/BritishColumbia/FAV04024/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03732/2023 2.3.4.4b
A/chicken/Idaho/24037521002/2024 2.3.4.4b
A/swan/Iowa/24037722001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04201/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03192/2023 2.3.4.4b
A/chicken/Alabama/24037981002/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV04257/2023 2.3.4.4b
A/chicken/Iowa/24036502001/2024 2.3.4.4b
A/pheasant/Kansas/24037794010/2024 2.3.4.4b
A/Chicken/BC/FAV034022022 2.3.4.4b
A/pelican/Kansas/24037429001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04191/2023 2.3.4.4b
A/Mixed/BC/FAV033912022 2.3.4.4b
A/Chicken/BritishColumbia/FAV03451/2023 2.3.4.4b
A/turkey/Minnesota/24038168002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03471/2023 2.3.4.4b
A/Chicken/BC/FAV033722022 2.3.4.4b
A/Chicken/BritishColumbia/FAV04562/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03683/2023 2.3.4.4b
A/Chicken/BC/FAV034012022 2.3.4.4b
A/Chicken/BritishColumbia/FAV03841/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03381/2022 2.3.4.4b
A/chicken/Wisconsin/24037974001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03321/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV04262/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03931/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03951/2023 2.3.4.4b
A/chicken/Arkansas/24037983001/2024 2.3.4.4b
A/turkey/Minnesota/24038168003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03641/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV04023/2023 2.3.4.4b
A/Pigeon/BritishColumbia/FAV01762/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03693/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03481/2023 2.3.4.4b
A/turkey/Minnesota/24038159003/2024 2.3.4.4b
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A/Chicken/BritishColumbia/FAV03512/2023 2.3.4.4b
A/pheasant/Kansas/24037794003/2024 2.3.4.4b
A/turkey/Minnesota/24037988003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04382/2023 2.3.4.4b
A/chicken/Minnesota/24038159002/2024 2.3.4.4b
A/Mixed/BC/FAV033932022 2.3.4.4b
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A/goose/Nebraska/24037518002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03472/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03521/2023 2.3.4.4b
A/Chicken/BC/FAV034112022 2.3.4.4b
A/Chicken/BritishColumbia/FAV03854/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03861/2023 2.3.4.4b
A/chicken/Iowa/24037490002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03041/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV04253/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03973/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03731/2023 2.3.4.4b
A/turkey/Minnesota/24038168001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03872/2023 2.3.4.4b
A/turkey/Iowa/24037492001/2024 2.3.4.4b
A/Pigeon/BritishColumbia/FAV01761/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03972/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03324/2023 2.3.4.4b
A/turkey/SouthDakota/24037530001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03491/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03462/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03631/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04561/2023 2.3.4.4b
A/duck/Minnesota/24038159001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03831/2023 2.3.4.4b
A/duck/Idaho/24037521001/2024 2.3.4.4b
A/swan/Iowa/24037493001/2024 2.3.4.4b
A/Duck/BritishColumbia/FAV15341/2022 2.3.4.4b
A/Chicken/BritishColumbia/FAV04381/2023 2.3.4.4b
A/duck/Ohio/24038008001/2024 2.3.4.4b
A/chicken/Nebraska/24037436002/2024 2.3.4.4b
A/turkey/Minnesota/24037987002/2024 2.3.4.4b
A/pheasant/Kansas/24037794007/2024 2.3.4.4b
A/chicken/Arkansas/24038151002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03871/2023 2.3.4.4b
A/pheasant/Kansas/24037810001/2024 2.3.4.4b
A/chicken/Iowa/24037489003/2024 2.3.4.4b
A/turkey/Minnesota/24037988002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03671/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03532/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03454/2023 2.3.4.4b
A/chicken/Oregon/24037945002/2024 2.3.4.4b
A/chicken/Iowa/24037488006/2024 2.3.4.4b
A/chicken/Iowa/24037490001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03531/2023 2.3.4.4b
A/chicken/Iowa/24037488005/2024 2.3.4.4b
A/Duck/BritishColumbia/FAV03701/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03952/2023 2.3.4.4b
A/chicken/Iowa/24037489001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03983/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03502/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04181/2023 2.3.4.4b
A/pheasant/Kansas/24037794005/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03101/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03322/2023 2.3.4.4b
A/chicken/Missouri/24037561001/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV04255/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV04651/2023 2.3.4.4b
A/chicken/Iowa/24037488001/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV03771/2023 2.3.4.4b
A/chicken/Arkansas/24037983003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03691/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04001/2023 2.3.4.4b
A/Mixed/BritishColumbia/FAV09491/2022 2.3.4.4b
A/Chicken/BritishColumbia/FAV03642/2023 2.3.4.4b
A/chicken/Kansas/24038163001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04041/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03341/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03832/2023 2.3.4.4b
A/chicken/Arkansas/24037983002/2024 2.3.4.4b
A/turkey/Iowa/24037492002/2024 2.3.4.4b
A/chicken/Alabama/24037981001/2024 2.3.4.4b
A/turkey/SouthDakota/24037530002/2024 2.3.4.4b
A/chicken/Oregon/24037945001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03882/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03492/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03881/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03961/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03672/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03042/2023 2.3.4.4b
A/turkey/Minnesota/24037987003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03461/2023 2.3.4.4b
A/goose/Minnesota/24038159004/2024 2.3.4.4b
A/turkey/SouthDakota/24037528002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03982/2023 2.3.4.4b
A/chicken/Iowa/24037488002/2024 2.3.4.4b
A/chicken/Iowa/24037488003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03191/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03962/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03703/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03651/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04372/2023 2.3.4.4b
A/guineafowl/Alabama/24037980001/2024 2.3.4.4b
A/pheasant/Kansas/24037794009/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03033/2023 2.3.4.4b
A/guineafowl/Nebraska/24037518003/2024 2.3.4.4b
A/pheasant/Kansas/24037794002/2024 2.3.4.4b
A/turkey/Minnesota/24037988001/2024 2.3.4.4b
A/cattle/Nevada/25-002645-004-original/2025 2.3.4.4b
A/cattle/Nevada/25-002645-005-original/2025 2.3.4.4b
A/cattle/Nevada/25-002645-003-original/2025 2.3.4.4b
A/cattle/Nevada/25-002645-006-original/2025 2.3.4.4b
178 changes: 178 additions & 0 deletions clade-labeling/h5nx-clades.tsv
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Expand Up @@ -37278,3 +37278,181 @@ A/muteswan/Slovakia/Vh1920/2024 EA-nonGsGD
A/Mallard/Sweden/SVA241217SZ0213FB288755OT/2024 EA-nonGsGD
A/Mallard/Sweden/SVA241211SZ0514FB284294OT/2024 EA-nonGsGD
A/dairycow/USA/036136001/2024 ?
A/chicken/Iowa/24037488003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03451/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04372/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV04651/2023 2.3.4.4b
A/pheasant/Kansas/24037810001/2024 2.3.4.4b
A/Chicken/BC/FAV033722022 2.3.4.4b
A/Turkey/BritishColumbia/FAV04261/2023 2.3.4.4b
A/turkey/Minnesota/24037987002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04181/2023 2.3.4.4b
A/pheasant/Kansas/24037794001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04381/2023 2.3.4.4b
A/chicken/Iowa/24037489001/2024 2.3.4.4b
A/swan/Iowa/24037722001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03882/2023 2.3.4.4b
A/chicken/Alabama/24037981002/2024 2.3.4.4b
A/chicken/Arkansas/24038151002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03472/2023 2.3.4.4b
A/chicken/SouthDakota/24037531001/2024 2.3.4.4b
A/pheasant/Kansas/24037794003/2024 2.3.4.4b
A/chicken/Arkansas/24037983002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04041/2023 2.3.4.4b
A/dairycow/California/24032196001R2/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03672/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03732/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03531/2023 2.3.4.4b
A/Chicken/BC/FAV034112022 2.3.4.4b
A/Chicken/BritishColumbia/FAV03102/2023 2.3.4.4b
A/turkey/SouthDakota/24037528001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03832/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03862/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03631/2023 2.3.4.4b
A/duck/Oregon/24037944001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03481/2023 2.3.4.4b
A/Mixed/BC/FAV033932022 2.3.4.4b
A/chicken/Idaho/24037521002/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV04257/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03642/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03693/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03871/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV04258/2023 2.3.4.4b
A/chicken/Iowa/24037490001/2024 2.3.4.4b
A/turkey/Minnesota/24037987001/2024 2.3.4.4b
A/pheasant/Kansas/24037794005/2024 2.3.4.4b
A/chicken/Iowa/24037491001/2024 2.3.4.4b
A/chicken/Alabama/24037981001/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV03341/2023 2.3.4.4b
A/chicken/Arkansas/24037983001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04382/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03731/2023 2.3.4.4b
A/chicken/Nebraska/24037436001/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV04023/2023 2.3.4.4b
A/cat/Minnesota/24037542001/2024 2.3.4.4b
A/turkey/Minnesota/24037988002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03042/2023 2.3.4.4b
A/swan/Iowa/24037493001/2024 2.3.4.4b
A/guineafowl/Alabama/24037980001/2024 2.3.4.4b
A/turkey/Minnesota/24038159003/2024 2.3.4.4b
A/Duck/BritishColumbia/FAV03962/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03461/2023 2.3.4.4b
A/turkey/Minnesota/24038168002/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV03381/2022 2.3.4.4b
A/pheasant/Kansas/24037794007/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04562/2023 2.3.4.4b
A/duck/Minnesota/24038159001/2024 2.3.4.4b
A/Chicken/BC/FAV034022022 2.3.4.4b
A/chicken/Mississippi/24038164001/2024 2.3.4.4b
A/turkey/SouthDakota/24037528002/2024 2.3.4.4b
A/chicken/Iowa/24037488006/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03841/2023 2.3.4.4b
A/chicken/Iowa/24036502002/2024 2.3.4.4b
A/Chicken/BC/FAV034012022 2.3.4.4b
A/Chicken/BritishColumbia/FAV03872/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03831/2023 2.3.4.4b
A/chicken/Iowa/24037489003/2024 2.3.4.4b
A/chicken/Iowa/24037491002/2024 2.3.4.4b
A/Chicken/BC/FAV033712022 2.3.4.4b
A/Duck/BritishColumbia/FAV03973/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03331/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03322/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03321/2023 2.3.4.4b
A/turkey/SouthDakota/24037530002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03191/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04191/2023 2.3.4.4b
A/turkey/Minnesota/24038168001/2024 2.3.4.4b
A/Duck/BritishColumbia/FAV03703/2023 2.3.4.4b
A/chicken/Kansas/24038163001/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV03771/2023 2.3.4.4b
A/turkey/Minnesota/24037988003/2024 2.3.4.4b
A/chicken/Missouri/24037561001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03691/2023 2.3.4.4b
A/Gallusgallus/Belgium/010680002/2025 2.3.4.4b
A/Mixed/BC/FAV033912022 2.3.4.4b
A/Chicken/BritishColumbia/FAV03982/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV04024/2023 2.3.4.4b
A/chicken/Iowa/24037488001/2024 2.3.4.4b
A/pheasant/Kansas/24037794008/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03323/2023 2.3.4.4b
A/chicken/Iowa/24037488002/2024 2.3.4.4b
A/Turkey/BritishColumbia/FAV04262/2023 2.3.4.4b
A/turkey/Minnesota/24037987003/2024 2.3.4.4b
A/Duck/BritishColumbia/FAV03972/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03492/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04371/2023 2.3.4.4b
A/pheasant/Kansas/24037794009/2024 2.3.4.4b
A/turkey/Iowa/24037492002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03522/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03683/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03031/2023 2.3.4.4b
A/duck/Idaho/24037521001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03512/2023 2.3.4.4b
A/chicken/Arkansas/24038151001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03462/2023 2.3.4.4b
A/chicken/Iowa/24036502001/2024 2.3.4.4b
A/chicken/Nebraska/24037436002/2024 2.3.4.4b
A/chicken/Iowa/24037490002/2024 2.3.4.4b
A/guineafowl/Nebraska/24037518003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03983/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03192/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV04253/2023 2.3.4.4b
A/chicken/Iowa/24037488005/2024 2.3.4.4b
A/chicken/Minnesota/24038159002/2024 2.3.4.4b
A/Duck/BC/FAV034212022 2.3.4.4b
A/turkey/Minnesota/24038168003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03032/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03931/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV03861/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03034/2023 2.3.4.4b
A/chicken/Wisconsin/24037974001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03101/2023 2.3.4.4b
A/chicken/Oregon/24037945002/2024 2.3.4.4b
A/chicken/Iowa/24037489002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV04561/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04201/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03324/2023 2.3.4.4b
A/goose/Minnesota/24038159004/2024 2.3.4.4b
A/Pigeon/BritishColumbia/FAV01762/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03952/2023 2.3.4.4b
A/whitetailedeagle/Finland/8258/2022 2.3.4.4b
A/turkey/Minnesota/24037988001/2024 2.3.4.4b
A/turkey/SouthDakota/24037530001/2024 2.3.4.4b
A/chicken/Oregon/24037945001/2024 2.3.4.4b
A/pelican/Kansas/24037429001/2024 2.3.4.4b
A/Duck/BritishColumbia/FAV03701/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV03961/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03684/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03454/2023 2.3.4.4b
A/chicken/Nebraska/24037518001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03041/2023 2.3.4.4b
A/Mixed/BritishColumbia/FAV09491/2022 2.3.4.4b
A/pheasant/Kansas/24037794002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03881/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV04001/2023 2.3.4.4b
A/Pigeon/BritishColumbia/FAV01761/2023 2.3.4.4b
A/pheasant/Kansas/24037794010/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03033/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03711/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03671/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03532/2023 2.3.4.4b
A/Duck/BritishColumbia/FAV15341/2022 2.3.4.4b
A/goose/Nebraska/24037518002/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03491/2023 2.3.4.4b
A/pheasant/Kansas/24037794006/2024 2.3.4.4b
A/Duck/BritishColumbia/FAV03951/2023 2.3.4.4b
A/duck/Ohio/24038008001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03521/2023 2.3.4.4b
A/chicken/Arkansas/24037983003/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03651/2023 2.3.4.4b
A/turkey/Iowa/24037492001/2024 2.3.4.4b
A/Chicken/BritishColumbia/FAV03471/2023 2.3.4.4b
A/Turkey/BritishColumbia/FAV04255/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03854/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03641/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03941/2023 2.3.4.4b
A/Chicken/BritishColumbia/FAV03502/2023 2.3.4.4b
A/cattle/Nevada/25-002645-003-original/2025 2.3.4.4b
A/cattle/Nevada/25-002645-006-original/2025 2.3.4.4b
A/cattle/Nevada/25-002645-004-original/2025 2.3.4.4b
A/cattle/Nevada/25-002645-005-original/2025 2.3.4.4b
27 changes: 27 additions & 0 deletions config/h5n1-cattle-outbreak/dropped_strains_h5n1-cattle-outbreak.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -246,3 +246,30 @@ A/westerngull/California/24-004708-001/2024
A/WesternGull/USA/24-004708-001-original/2024
A/WesternSandpiper/USA/24-004707-001-original/2024
A/woodduck/NorthCarolina/W24-026/2024

# D1.1 spillover
A/StripedSkunk/WA/W240530074-2-1/2024
A/CATTLE/USA/25-002645-006/2025
A/CATTLE/USA/25-002645-005/2025
A/CATTLE/USA/25-002645-004/2025
A/CATTLE/USA/25-002645-003/2025
A/chicken/AR/24-037983-003-original/2024
A/chicken/AR/24-037983-001-original/2024
A/chicken/AR/24-037983-002-original/2024
A/chicken/MN/24-038159-002-original/2024
A/Duck/MN/24-038159-001-original/2024
A/goose/MN/24-038159-004-original/2024
A/Turkey/MN/24-035355-002-original/2024
A/Turkey/MN/24-035355-001-original/2024
A/Turkey/MN/24-035521-001-original/2024
A/Turkey/MN/24-035524-003-original/2024
A/Turkey/MN/24-035524-004-original/2024
A/Turkey/MN/24-035524-001-original/2024
A/Turkey/MN/24-035524-002-original/2024
A/Turkey/MN/24-034932-001-original/2024
A/Turkey/MN/24-034932-003-original/2024
A/Turkey/MN/24-034932-002-original/2024
A/Turkey/MN/24-035355-003-original/2024
A/Turkey/MN/24-036792-002-original/2024
A/Turkey/MN/24-036792-003-original/2024
A/Turkey/MN/24-036792-001-original/2024
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