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merge: Support sequences without cross-checking #3265

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merge: Support sequences without cross-checking

merge: Support sequences without cross-checking #3265

Triggered via pull request January 31, 2025 01:17
@victorlinvictorlin
synchronize #1631
victorlin/merge-sequences-separately
Status Success
Total duration 22m 17s
Artifacts 18

ci.yaml

on: pull_request
Matrix: pytest-cram
mypy
54s
mypy
pyright
14s
pyright
build-docs  /  build
2m 35s
build-docs / build
check-docs
41s
check-docs
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
release
0s
release
codecov
12s
codecov
rebuild-docker-image
0s
rebuild-docker-image
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20 warnings
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (mumps)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (ebola)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1631/merge, Key: 2025-01-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.

Artifacts

Produced during runtime
Name Size
coverage
171 KB
output-avian-flu
96.6 KB
output-dengue
1.16 MB
output-ebola
111 KB
output-lassa
1.49 MB
output-measles
3.86 MB
output-mpox
12.8 MB
output-mumps
339 KB
output-ncov
714 KB
output-oropouche
507 KB
output-rabies
4.92 MB
output-rsv
9.46 MB
output-seasonal-cov
1.68 MB
output-seasonal-flu
53.8 KB
output-tb
5.02 MB
output-wnv
180 KB
output-yellow-fever
2.11 MB
output-zika
746 KB