Hide BiopythonDeprecationWarnings when reading certain sequence files #3197
victorlinci.yaml
on: pull_request
Matrix: pytest-cram
mypy
55s
pyright
17s
build-docs
/
build
3m 5s
check-docs
47s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
0s
Annotations
46 errors and 25 warnings
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pathogen-repo-ci-v0 (ebola)
Process completed with exit code 1.
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pathogen-repo-ci (lassa)
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pathogen-repo-ci (lassa)
Process completed with exit code 1.
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pathogen-repo-ci (wnv)
Process completed with exit code 1.
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pathogen-repo-ci (wnv)
Process completed with exit code 1.
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pathogen-repo-ci-v0 (mumps)
Process completed with exit code 1.
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pathogen-repo-ci-v0 (avian-flu)
Process completed with exit code 1.
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pathogen-repo-ci (dengue)
Process completed with exit code 1.
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pathogen-repo-ci (dengue)
Process completed with exit code 1.
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pathogen-repo-ci-v0 (rsv)
Process completed with exit code 1.
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pathogen-repo-ci (yellow-fever)
Process completed with exit code 1.
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pathogen-repo-ci (yellow-fever)
Process completed with exit code 1.
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pathogen-repo-ci (zika)
Process completed with exit code 1.
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pathogen-repo-ci (zika)
Process completed with exit code 1.
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test (python=3.9 biopython=1.82)
Process completed with exit code 1.
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test (python=3.11 biopython=1.80)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.11 biopython=1.80)
The operation was canceled.
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pathogen-repo-ci (measles)
Process completed with exit code 1.
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pathogen-repo-ci (measles)
Process completed with exit code 1.
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test (python=3.11 biopython=1.82)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.11 biopython=1.82)
The operation was canceled.
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pathogen-repo-ci (mpox)
Process completed with exit code 1.
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pathogen-repo-ci (mpox)
Process completed with exit code 1.
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test (python=3.10 biopython=1.82)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.10 biopython=1.82)
The operation was canceled.
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test (python=3.10 biopython=1.80)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.10 biopython=1.80)
The operation was canceled.
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test (python=3.9 biopython=latest)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.9 biopython=latest)
The operation was canceled.
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test (python=3.12 biopython=1.82)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.12 biopython=1.82)
The operation was canceled.
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test (python=3.9 biopython=1.80)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.9 biopython=1.80)
The operation was canceled.
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test (python=3.10 biopython=latest)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.10 biopython=latest)
The operation was canceled.
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test (python=3.11 biopython=latest)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.11 biopython=latest)
The operation was canceled.
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test (python=3.12 biopython=latest)
The job was canceled because "_3_9_1_82" failed.
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test (python=3.12 biopython=latest)
The operation was canceled.
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pathogen-repo-ci-v0 (tb)
Process completed with exit code 1.
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pathogen-repo-ci-v0 (seasonal-flu)
Process completed with exit code 1.
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pathogen-repo-ci (oropouche)
Process completed with exit code 1.
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pathogen-repo-ci (oropouche)
Process completed with exit code 1.
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pathogen-repo-ci (rabies)
Process completed with exit code 1.
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pathogen-repo-ci (rabies)
Process completed with exit code 1.
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build-docs / build
Process completed with exit code 1.
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pyright
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (ebola)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (lassa)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (wnv)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (mumps)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (avian-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (dengue)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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check-docs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (rsv)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (yellow-fever)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (zika)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.9 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mypy
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (measles)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (mpox)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (ncov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (tb)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (seasonal-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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pathogen-repo-ci (oropouche)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (seasonal-cov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (rabies)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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build-docs / build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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output-avian-flu
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21.1 KB |
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output-dengue
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138 KB |
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output-ebola
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36.9 KB |
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output-lassa
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87.8 KB |
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output-measles
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3.72 MB |
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output-mpox
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10.2 MB |
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output-mumps
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147 KB |
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output-ncov
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707 KB |
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output-oropouche
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329 KB |
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output-rabies
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4.59 MB |
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output-rsv
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5.1 MB |
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output-seasonal-cov
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1.22 MB |
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output-seasonal-flu
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23.8 KB |
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output-tb
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5 MB |
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output-wnv
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55.8 KB |
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output-yellow-fever
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1.49 MB |
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output-zika
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680 KB |
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