Merge pull request #1690 from nextstrain/fix/root-state-in-sequence-r… #3129

Job	Run time
check-docs	35s
mypy	49s
pathogen-repo-ci (dengue)	2m 48s
pathogen-repo-ci (lassa)	7m 20s
pyright	17s
pathogen-repo-ci-v0 (avian-flu)	1m 2s
pathogen-repo-ci (measles)	1m 39s
test (python=3.9 biopython=1.80)	13m 4s
pathogen-repo-ci-v0 (ebola)	1m 3s
pathogen-repo-ci (mpox)	1m 17s
test (python=3.9 biopython=1.82)	13m 20s
pathogen-repo-ci-v0 (mumps)	1m 4s
pathogen-repo-ci (oropouche)	1m 21s
test (python=3.9 biopython=latest)	13m 1s
pathogen-repo-ci-v0 (ncov)	1m 16s
pathogen-repo-ci (rabies)	2m 24s
test (python=3.10 biopython=1.80)	12m 38s
pathogen-repo-ci-v0 (rsv)	8m 24s
pathogen-repo-ci (seasonal-cov)	1m 53s
test (python=3.10 biopython=1.82)	12m 55s
pathogen-repo-ci-v0 (seasonal-flu)	1m 25s
pathogen-repo-ci (wnv)	1m 10s
pathogen-repo-ci-v0 (tb)	1m 27s
test (python=3.10 biopython=latest)	12m 50s
pathogen-repo-ci (yellow-fever)	4m 9s
test (python=3.11 biopython=1.80)	13m 3s
pathogen-repo-ci (zika)	1m 3s
test (python=3.11 biopython=1.82)	12m 54s
test (python=3.11 biopython=latest)	12m 59s
test (python=3.12 biopython=1.82)	20m 29s
test (python=3.12 biopython=latest)	19m 50s
build-docs / build	2m 15s
codecov	11s
release	0s
rebuild-docker-image	0s
	3h 21m 55s

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