[REF] Rename API_QUERY_URL to NB_API_QUERY_URL

docs/neurobagel_environment_variables.tsv

@@ -15,4 +15,4 @@ Environment variable	Required in .env?	Description	Default value if not set	Rele
 `NB_GRAPH_PORT`	No	Port number used by the _graph server container_	`7200` *	Docker
 `NB_QUERY_TAG`	No	Docker image tag for the query tool	`latest`	Docker
 `NB_QUERY_PORT_HOST`	No	Port number used by the `query_tool` on the host machine	`3000`	Docker
-`API_QUERY_URL`	Yes, unless default is correct	URL of the API that the query tool will send its requests to. The port number in the URL **must** correspond to `NB_API_PORT_HOST`. See also the [query tool README](https://github.com/neurobagel/query-tool?tab=readme-ov-file#set-the-environment-variables). **Must** end in a forward slash `/`!	`http://localhost:8000/`	Docker
+`NB_API_QUERY_URL`	Yes, unless default is correct	URL of the API that the query tool will send its requests to. The port number in the URL **must** correspond to `NB_API_PORT_HOST`. See also the [query tool README](https://github.com/neurobagel/query-tool?tab=readme-ov-file#set-the-environment-variables). **Must** end in a forward slash `/`!	`http://localhost:8000/`	Docker

local_federation/docker-compose.yml

@@ -16,4 +16,4 @@ services:
     ports:
       - "${NB_QUERY_PORT_HOST:-3000}:3000"
     environment:
-      - API_QUERY_URL=${API_QUERY_URL:-http://localhost:8000/}
+      - NB_API_QUERY_URL=${NB_API_QUERY_URL:-http://localhost:8000/}

local_federation/template.env

@@ -11,7 +11,7 @@ NB_API_TAG=latest
 
 # ---- CONFIGURATION FOR QUERY TOOL ----
 # URL of the f-API as it will appear to a user
-API_QUERY_URL=http://localhost:8080
+NB_API_QUERY_URL=http://localhost:8080
 # Docker image tag of the query tool (default latest)
 NB_QUERY_TAG=latest
 # Port that the query tool will be exposed on the host and likely the network (default 3000)

local_node/template.env

@@ -19,4 +19,4 @@ NB_GRAPH_IMG=ontotext/graphdb:10.3.1
 # NB_GRAPH_PORT=7200
 # NB_QUERY_TAG=latest
 # NB_QUERY_PORT_HOST=3000
-# API_QUERY_URL=http://localhost:8000/
+# NB_API_QUERY_URL=http://localhost:8000/

local_node_with_query_tool/docker-compose.yml

@@ -25,4 +25,4 @@ services:
     ports:
       - "${NB_QUERY_PORT_HOST:-3000}:3000"
     environment:
-      API_QUERY_URL: "${API_QUERY_URL:-http://localhost:8000/}"
+      NB_API_QUERY_URL: "${NB_API_QUERY_URL:-http://localhost:8000/}"

local_node_with_query_tool/template.env

@@ -8,7 +8,7 @@ NB_RETURN_AGG=true
 NB_API_TAG=latest
 NB_API_ALLOWED_ORIGINS="https://localhost:3000 http://localhost:3000"  # e.g., allow multiple origins from a query tool deployed locally with default port settings; edit as needed for your setup
 NB_GRAPH_IMG=ontotext/graphdb:10.3.1
-API_QUERY_URL=http://localhost:8000/
+NB_API_QUERY_URL=http://localhost:8000/
 
 ## ADDITIONAL CONFIGURABLE PARAMETERS: Uncomment and modify values of the below variables as needed to use non-default values.
 # NB_API_PORT_HOST=8000