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v2.0.3 #359

Merged
merged 28 commits into from
May 3, 2024
Merged

v2.0.3 #359

merged 28 commits into from
May 3, 2024

Commits on Feb 25, 2024

  1. edit of vignettes

    ncborcherding committed Feb 25, 2024
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Commits on Feb 29, 2024

  1. Merge pull request #327 from ncborcherding/master

    reupping dev branch
    ncborcherding authored Feb 29, 2024
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  2. clonalOverlay() changes for flexibility

    #325 add cut.category for variable selection
    ncborcherding committed Feb 29, 2024
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  3. Update NEWS.md

    ncborcherding committed Feb 29, 2024
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Commits on Mar 27, 2024

  1. Merge pull request #338 from ncborcherding/master

    rebase dev to match merge
    ncborcherding authored Mar 27, 2024
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  2. clonalOccupy NA fix

    ncborcherding committed Mar 27, 2024
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Commits on Apr 2, 2024

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  2. updating testthat

    ncborcherding committed Apr 2, 2024
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Commits on Apr 11, 2024

  1. Merge pull request #351 from ncborcherding/master

    Update Ibex/Trex vingette
    ncborcherding authored Apr 11, 2024
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  2. Update OS load

    ncborcherding committed Apr 11, 2024
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  4. combineExpression() readd clone

    #319 when user calls single chain for combination, will calculate sizes by single-chain but add both chains to single-cell object
    ncborcherding committed Apr 11, 2024
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  5. Add dplyr imports

    ncborcherding committed Apr 11, 2024
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Commits on Apr 15, 2024

  1. Add ParseBio support

    ncborcherding committed Apr 15, 2024
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Commits on Apr 18, 2024

  1. add filterNonproductive parameter

    combineTCR() and combineBCR() allow for keep or remove nonproductive clones
    ncborcherding committed Apr 18, 2024
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  3. combineTCR output columns fix

    #355 streamlined column filter to remove non-combined column formats
    ncborcherding committed Apr 18, 2024
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  5. update clonalOverlap ordering

    #354 issue with auto-reordering
    ncborcherding committed Apr 18, 2024
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Commits on Apr 20, 2024

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Commits on Apr 24, 2024

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Commits on Apr 26, 2024

  1. clonalCluster update

    Fix exportGraph and underlying lcCompare Improvements
    ncborcherding committed Apr 26, 2024
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Commits on Apr 30, 2024

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Commits on May 1, 2024

  1. update testhat

    ncborcherding committed May 1, 2024
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  3. dplyr import issue

    ncborcherding committed May 1, 2024
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Commits on May 3, 2024

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  2. readd exporttable

    ncborcherding committed May 3, 2024
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