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v2.0.3 #359

Merged
merged 28 commits into from
May 3, 2024
Merged

v2.0.3 #359

merged 28 commits into from
May 3, 2024

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ncborcherding
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Improving loadContigs and clonalClutering

#325 add cut.category for variable selection
#319 when user calls single chain for combination, will calculate sizes by single-chain but add both chains to single-cell object
combineTCR() and combineBCR() allow for keep or remove nonproductive clones
#355 streamlined column filter to remove non-combined column formats
#354 issue with auto-reordering
Fix exportGraph and underlying lcCompare Improvements
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codecov bot commented May 1, 2024

Codecov Report

Attention: Patch coverage is 80.90909% with 21 lines in your changes are missing coverage. Please review.

Project coverage is 84.65%. Comparing base (568edc1) to head (bb2232c).
Report is 1 commits behind head on master.

❗ Current head bb2232c differs from pull request most recent head 7b0d94e. Consider uploading reports for the commit 7b0d94e to get more accurate results

Files Patch % Lines
R/combineExpression.R 11.11% 8 Missing ⚠️
R/loadContigs.R 85.36% 6 Missing ⚠️
R/clonalCluster.R 77.77% 2 Missing ⚠️
R/combineContigs.R 83.33% 2 Missing ⚠️
R/clonalOccupy.R 92.30% 1 Missing ⚠️
R/clonalOverlay.R 80.00% 1 Missing ⚠️
R/utils.R 95.23% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #359      +/-   ##
==========================================
+ Coverage   83.73%   84.65%   +0.91%     
==========================================
  Files          42       41       -1     
  Lines        3124     3109      -15     
==========================================
+ Hits         2616     2632      +16     
+ Misses        508      477      -31     

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@ncborcherding ncborcherding merged commit 93d31af into master May 3, 2024
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