v0.9.4

What's Changed

• Add flywire_updateids() by @jefferis in #127
• add support for the Seung/Allen python CAVE including flywire_cave_client()
flywire_cave_query() (#122)
• add flywire_updateids() (#127)
• also more robustness to handling of NAs in flywire_rootid()
• first implementation of flytable_* functions including flytable_query()
flytable_list_rows() flytable_login() (#126)
• note about SSL certificate problem with some flywire/fanc queries bug (#125)
• Add ids type info to flywire_partners()

New Contributors

• @YijieYin made their first contribution in #108

Full Changelog: v0.9.3...v0.9.4

v0.9.3

What's Changed

• Handle 1 node neurons by @jefferis in #120
• Feature/token handling by @jefferis in #121
• switch annotationframeworkclient->caveclient 5b9a14b

Full Changelog: v0.9.2...v0.9.3

v0.9.2

What's Changed

• Flywire synapse fixes by @alexanderbates in #112
• fix path of cv secret when no domain 3d0a6d2
• Add flywire_scene() function b4cf8be

Full Changelog: v0.9.1...v0.9.2

v0.9.1

What's Changed

• Feature/ngscene basic manipulation by @jefferis in #58
• Feature/nglayer manipulation by @jefferis in #60
• Feature/autosyn by @jefferis in #63
• Feature/cache flywire leaves by @jefferis in #71
• Feature/local db path by @jefferis in #73
• Feature/flywire partners both by @jefferis in #77
• Feature/check for raw coords by @jefferis in #82
• Feature/more 64bit ids by @jefferis in #87
• Feature/neuron synapses by @jefferis in #80
• Return errors as warning with tryCatch by @alexanderbates in #90
• Basic implementation of flywire_islatest by @jefferis in #89
• Add optional timestamp to islatest by @jefferis in #92
• Feature/rootid speedups by @jefferis in #93
• Feature/neuroglancer colour by @SiqiFang in #91
• remove two stage travis test as seems to duplicate build by @jefferis in #96
• Feature/persistent cache by @jefferis in #98
• Feature/simpler pyinstall by @jefferis in #99
• Add flywire_adjacency_matrix by @jefferis in #95
• Created flywire_synapse_annotations by @alexanderbates in #100
• Feature/save cloudvolume meshes by @jefferis in #102
• fix flywire_partner_summary when neurons have no synapses by @jefferis in #105
• Warn when trying to fetch synapse details from spine by @jefferis in #106
• Chunk flywire_rootid lookups by @jefferis in #111
• Feature flywire_shortenurl and flywire_expandurl by @jefferis in #113
• Standard github actions setup by @jefferis in #115
• Feature/spine locations by @jefferis in #114
• Skeletor 1.0.0 by @jefferis in #116
• Add support for multiple cave/zetta tokens by @jefferis in #119

New Contributors

• @SiqiFang made their first contribution in #91

Full Changelog: v0.9...v0.9.1

fafbseg v0.8.2

• Much faster flywire_xyz2id() supervoxel id mapping using spine service (#44)
• Add new flywire_leaves() function to find supervoxels in a neuron (#43)
• Fixing typos and adding doi for TEASAR (#41 by @mmc46)
• Fixing 2 things in overlay mesh+skeleton example
  (#40 by @mmc46)
• Fix flywire_xyz2id eg in doc 'The natverse and flywire meshes' returns an error (#39)
• Output of dr_fafbseg() points to wrong token helper function (#38 by @mmc46)

You can see the full list of closed issues
on GitHub.

fafbseg v0.8.1

This release includes changes from both version 0.8.1 and version 0.8.0 (which was never released)

fafbseg 0.8.1

• New function skeletor() to skeletonise meshes especially flywire neurons
  based on the Python package of the same name (#35).
• Large speed up for flywire_rootid() (#37)
• Fix flywire_xyz2id() so that it can actually find supervoxels (as well as root ids) (#37)
• function dr_fafbseg() to give a status update on your installation (#36)
• read_cloudvolume_meshes() can now accept flywire URLs (which will be expanded if necessary to define the segments to download)

fafbseg 0.8.0

• Support for some basic flywire API calls #31, #34
• Better integrate flywire api features
• Fix/flywire coordinate errors
• Fix error in fafb2flywire during xform_brain #30, #32, #33
• Switch to transform-service API on spine
• Add support for FANC3-FANC4 transforms #28
• switch back to wire3d #27
• Add fafb2flywire i.e. the inverse of the original FlyWire->FAFB transformation #26
• Support for reading flywire meshes without cloudvolume #25
• Flywire API streamlining (@SridharJagannathan) #22
• Teach read_cloudvolume_meshes to work for flywire URLs #20
• ngl_segments() needs to be able to expand flywire URLs #16

You can see the full list of closed issues
for the combined 0.8.0 and 0.8.1 release on GitHub.

fafbseg v0.7.0

fafbseg 0.7.0

• basic support for reading meshes via CloudVolume e.g. to fetch neurons from
  flywire.ai. See read_cloudvolume_meshes() for details including the required
  Python setup.
• very basic support for skeletonising neurons meshed (e.g. flywire neurons)
  via meshparty_skeletonize()
• add flywire2fafb() to support for transforming neurons FlyWire->FAFB
  (and with some loss of accuracy in the reverse) (#11)
• includes a fix for NaN values in return (#12,#13)
• much faster FlyWire->FAFB transformation, up to millions of points per minute
  (#24)
• moved repo to https://github.com/natverse/fafbseg (#19)

fafbseg 0.6.5

• default chunksize for brainmaps_xyz2id() reduce to 200 to reflect API
  changes.
• new functions choose_segmentation() and with_segmentation() to choose
  default auto-segmentation
• New Shiny app (see README and https://jefferislab.shinyapps.io/CATMAID-Neuroglancer-Converter/)
• give brainmaps_fetch() a generic cache option and the ability to clear the
  cache with brainmaps_clear_cache() (#8)
• give brainmaps_fetch() a retry option to help with sporadic timeouts (#9)
• give catmaid2ngl() a chunksize option that can be used to reduce timeout
  issues.
• simplify package .onLoad and retire fafbseg.divisor option
  (now calculated automatically rather than being a user option)
• simplify internal brainmaps_voxdims function using cache mechanism

fafbseg 0.6.4

• fix bug revealed by latest public version of zip package
• fix missing import of dplyr::n() in find_topn()

fafbseg 0.6.3

• Give find_topn() and read_top() ability to return segments in
  increasing (rather than decreasing) size order.

fafbseg v0.6.2

• fix ngl_encode_url() when only one segment in scene (#5)
• fix handling or neuroglancer URLs with two segment sources (#4)